CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

arid5b *(Tetraodon nigroviridis)* ARID/BRIGHT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF01388 (ARID)	IPR001606	ENSTNIG00000007478	T014800_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Arid5b M01661_2.00	Mus musculus	NDATWHNN	NNDWATHN	PBM Weirauch et al.(2014) pTH4426	0.738	0.884
ARID5B M08707_2.00	Homo sapiens	DNBKDRTATTSKD	HMSAATAYHMVNH	Misc Kulakovskiy et al.(2013) ARI5B_HUMAN.H11MO.0.C	0.738	0.884
Arid5b M08708_2.00	Mus musculus	DNBKDRTATTSKD	HMSAATAYHMVNH	Misc Kulakovskiy et al.(2013) ARI5B_MOUSE.H11MO.0.C	0.738	0.884
ARID5B M09767_2.00	Homo sapiens	KBDGTATTGTRSWB	VWSYACAATACHVM	Transfac Matys et al.(2006) V$MRF2_01	0.738	0.884
Arid5a M00116_2.00	Mus musculus	NHAATATTDNN	NNHAATATTDN	PBM Badis et al.(2009) Arid5a_3770	0.657	0.756
Arid5a M01663_2.00	Rattus norvegicus	NNNRWATHNN	NNDATWYNNN	PBM Weirauch et al.(2014) pTH5121	0.657	0.756
arid6 M01657_2.00	Danio rerio	NNRWATYN	NRATWYNN	PBM Weirauch et al.(2014) pTH5120	0.630	0.651
e_gw.4.260.1_CONSTRUCT M01668_2.00	PBM CONSTRUCTS	NNNDATHNNN	NNNDATHNNN	PBM Weirauch et al.(2014) pTH5122	0.506	0.605
For this family, TFs with SR scores > 0.422* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSTNIP00000010287	ARID/BRIGHT	320	406	EEQAFLVDLYKYMKDRDTPIERIPFLGFKQINLWTMFQAAQKLGGYELITVRRQWKHVYDELGGNPSSTSAATCTRRHYERLLLPYE

Links
Other ARID/BRIGHT family TFs
Other *Tetraodon nigroviridis* TFs