Arid5a (Rattus norvegicus)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSRNOG00000015382 T014756_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable several functions, including identical protein binding activity; nuclear receptor binding activity; and nucleic acid binding activity. Predicted to be involved in several processes, including cellular response to estrogen stimulus; positive regulation of T-helper 17 type immune response; and positive regulation of cytokine production. Predicted to act upstream of or within chondrocyte differentiation; positive regulation of histone acetylation; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human ARID5A (AT-rich interaction domain 5A). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5a
M01663_2.00		 Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.785 1.000
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.649 0.647
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.632 0.753
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.632 0.753
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.632 0.753
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.632 0.753
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.493 0.588
For this family, TFs with SR scores > 0.422 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01663_2.00 ARID/BRIGHT 21 106

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000071542 ARID/BRIGHT 52 137

Links

Other ARID/BRIGHT family TFs
Other Rattus norvegicus TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSMPUG00000008907 Mustela putorius furo ENSMPUG00000008907 I 0.785
Arid5a Dipodomys ordii ENSDORG00000002540 I 0.785
ARID5A Equus caballus ENSECAG00000023667 I 0.785
ARID5A Dasypus novemcinctus ENSDNOG00000035690 I 0.785
ARID5A Loxodonta africana ENSLAFG00000009162 I 0.785
ENSCSAG00000017355 Chlorocebus sabaeus ENSCSAG00000017355 I 0.785
ARID5A Pan troglodytes ENSPTRG00000012234 I 0.785
Arid5a Mus musculus ENSMUSG00000037447 D 0.785
ARID5A Monodelphis domestica ENSMODG00000008611 I 0.785
ARID5A Erinaceus europaeus ENSEEUG00000008247 I 0.785
ARID5A Sus scrofa ENSSSCG00000008123 I 0.785
ENSMEUG00000014406 Macropus eugenii ENSMEUG00000014406 I 0.785
ARID5A Gorilla gorilla ENSGGOG00000017068 I 0.785
ARID5A Homo sapiens ENSG00000196843 I 0.785
ARID5A Tursiops truncatus ENSTTRG00000007812 I 0.785
ENSSHAG00000018209 Sarcophilus harrisii ENSSHAG00000018209 I 0.785
ARID5A Myotis lucifugus ENSMLUG00000003208 I 0.785
ARID5A Felis catus ENSFCAG00000024950 I 0.785
Cmyd_10001620 Chelonia mydas Cmyd_10001620 I 0.785
ARID5A Pteropus vampyrus ENSPVAG00000009400 I 0.785
ARID5A Cavia porcellus ENSCPOG00000026444 I 0.785
ARID5A Canis familiaris ENSCAFG00000006546 I 0.785
ARID5A Procavia capensis ENSPCAG00000006363 I 0.785
ENSAMEG00000008932 Ailuropoda melanoleuca ENSAMEG00000008932 I 0.785
ENSPANG00000012565 Papio anubis ENSPANG00000012565 I 0.785
Myotis_brandtii_ARID5A_10013684 Myotis brandtii Myotis_brandtii_ARID5A_10013684 I 0.785
ARID5A Bos taurus ENSBTAG00000014090 I 0.785
ENSPSIG00000014127 Pelodiscus sinensis ENSPSIG00000014127 I 0.785
ARID5A Callithrix jacchus ENSCJAG00000007759 I 0.785
ARID5A Otolemur garnettii ENSOGAG00000004116 I 0.785
ENSPPYG00000012072 Pongo abelii ENSPPYG00000012072 I 0.785
ENSSTOG00000019546 Ictidomys tridecemlineatus ENSSTOG00000019546 I 0.776
Ogr03010 Ophisaurus gracilis Ogr03010 I 0.771
Alligator_sinensis_CCG013281.1 Alligator sinensis Alligator_sinensis_CCG013281.1 I 0.771
ENSLACG00000014124 Latimeria chalumnae ENSLACG00000014124 I 0.769
ARID5A Ochotona princeps ENSOPRG00000015571 I 0.745
ENSAMXG00000005409 Astyanax mexicanus ENSAMXG00000005409 I 0.744
ENSLOCG00000015055 Lepisosteus oculatus ENSLOCG00000015055 I 0.744
arid5a Danio rerio ENSDARG00000077120 I 0.711
ENSGALG00000027335 Gallus gallus ENSGALG00000027335 I 0.708
ENSTGUG00000015609 Taeniopygia guttata ENSTGUG00000015609 I 0.708
ENSFALG00000000299 Ficedula albicollis ENSFALG00000000299 I 0.708
ENSTNIG00000006278 Tetraodon nigroviridis ENSTNIG00000006278 I 0.706
ENSONIG00000010644 Oreochromis niloticus ENSONIG00000010644 I 0.706
ENSORLG00000011620 Oryzias latipes ENSORLG00000011620 I 0.706
ENSPFOG00000012795 Poecilia formosa ENSPFOG00000012795 I 0.706
ENSXMAG00000001883 Xiphophorus maculatus ENSXMAG00000001883 I 0.706
ENSPMAG00000002699 Petromyzon marinus ENSPMAG00000002699 I 0.688
ENSTRUG00000001547 Takifugu rubripes ENSTRUG00000001547 I 0.687
ARID5A Macaca mulatta ENSMMUG00000030744 I 0.685
ENSORLG00000018351 Oryzias latipes ENSORLG00000018351 I 0.665
ENSGMOG00000008075 Gadus morhua ENSGMOG00000008075 I 0.663
arid5b Gasterosteus aculeatus ENSGACG00000010603 I 0.657
ENSXMAG00000018209 Xiphophorus maculatus ENSXMAG00000018209 I 0.657
ENSONIG00000000889 Oreochromis niloticus ENSONIG00000000889 I 0.657
arid5b Danio rerio ENSDARG00000037196 I 0.657
ENSAMXG00000012004 Astyanax mexicanus ENSAMXG00000012004 I 0.657
arid5b Takifugu rubripes ENSTRUG00000010671 I 0.657
ENSGMOG00000004984 Gadus morhua ENSGMOG00000004984 I 0.657
ENSLOCG00000006809 Lepisosteus oculatus ENSLOCG00000006809 I 0.657
arid5b Tetraodon nigroviridis ENSTNIG00000007478 I 0.657
ENSPFOG00000012334 Poecilia formosa ENSPFOG00000012334 I 0.657
ENSORLG00000004756 Oryzias latipes ENSORLG00000004756 I 0.657
ENSLOCG00000005151 Lepisosteus oculatus ENSLOCG00000005151 I 0.649
arid6 Danio rerio ENSDARG00000069988 D 0.649
ENSPFOG00000022560 Poecilia formosa ENSPFOG00000022560 I 0.638
ENSP00000279873 Macaca fascicularis ENSP00000279873 I 0.632
Gfo_R015732 Geospiza fortis Gfo_R015732 I 0.632
Myotis_brandtii_ARID5B_10031403 Myotis brandtii Myotis_brandtii_ARID5B_10031403 I 0.632
Pvit_18395 Pogona vitticeps Pvit_18395 I 0.632
arid5b Xenopus tropicalis XB-GENE-1007579 I 0.632
Tal_R007047 Tyto alba Tal_R007047 I 0.632
ENSBTAP00000008847-D1 Bos grunniens ENSBTAP00000008847-D1 I 0.632
Ogr08677 Ophisaurus gracilis Ogr08677 I 0.632
ARID5B Pteropus vampyrus ENSPVAG00000010482 I 0.632
Aan_R006833 Calypte anna Aan_R006833 I 0.632
ENSSHAG00000012252 Sarcophilus harrisii ENSSHAG00000012252 I 0.632
ARID5B Sus scrofa ENSSSCG00000010219 I 0.632
ENSTSYG00000010758 Tarsius syrichta ENSTSYG00000010758 I 0.632
ARID5B Taeniopygia guttata ENSTGUG00000005270 I 0.632
Afo_R009473 Aptenodytes forsteri Afo_R009473 I 0.632
ARID5B Sorex araneus ENSSARG00000002423 I 0.632
Cmyd_10021475 Chelonia mydas Cmyd_10021475 I 0.632
ARID5B Pan troglodytes ENSPTRG00000002534 I 0.632
Brh_R002693 Buceros rhinoceros Brh_R002693 I 0.632
Alligator_sinensis_CCG017455.1 Alligator sinensis Alligator_sinensis_CCG017455.1 I 0.632
ENSPSIG00000010908 Pelodiscus sinensis ENSPSIG00000010908 I 0.632
ARID5B Otolemur garnettii ENSOGAG00000015939 I 0.632
ARID5B Echinops telfairi ENSETEG00000002612 I 0.632
ARID5B Erinaceus europaeus ENSEEUG00000000691 I 0.632
ARID5B Equus caballus ENSECAG00000019795 I 0.632
ARID5B Felis catus ENSFCAG00000026767 I 0.632
ARID5B Homo sapiens ENSG00000150347 D 0.632
ENSLACG00000015032 Latimeria chalumnae ENSLACG00000015032 I 0.632
ARID5B Gorilla gorilla ENSGGOG00000004127 I 0.632
ENSGALG00000002991 Gallus gallus ENSGALG00000002991 I 0.632
ARID5B Dasypus novemcinctus ENSDNOG00000043861 I 0.632
ENSCSAG00000007410 Chlorocebus sabaeus ENSCSAG00000007410 I 0.632
ENSAPLG00000010915 Anas platyrhynchos ENSAPLG00000010915 I 0.632
ENSAMEG00000003626 Ailuropoda melanoleuca ENSAMEG00000003626 I 0.632
ARID5B Anolis carolinensis ENSACAG00000010922 I 0.632
ARID5B Bos taurus ENSBTAG00000006729 I 0.632
ARID5B Canis familiaris ENSCAFG00000012991 I 0.632
ENSCPOG00000003685 Cavia porcellus ENSCPOG00000003685 I 0.632
ARID5B Callithrix jacchus ENSCJAG00000007072 I 0.632
ARID5B Choloepus hoffmanni ENSCHOG00000011695 I 0.632
ARID5B Loxodonta africana ENSLAFG00000015576 I 0.632
ENSFALG00000013304 Ficedula albicollis ENSFALG00000013304 I 0.632
ENSNLEG00000012110 Nomascus leucogenys ENSNLEG00000012110 I 0.632
Arid5b Mus musculus ENSMUSG00000019947 D 0.632
ENSMPUG00000011076 Mustela putorius furo ENSMPUG00000011076 I 0.632
ARID5B Ornithorhynchus anatinus ENSOANG00000015260 I 0.632
ENSOARG00000004403 Ovis aries ENSOARG00000004403 I 0.632
ARID5B Procavia capensis ENSPCAG00000002044 I 0.632
ENSPANG00000022067 Papio anubis ENSPANG00000022067 I 0.632
ARID5B Oryctolagus cuniculus ENSOCUG00000027029 I 0.632
ARID5B Macaca mulatta ENSMMUG00000000424 I 0.632
ARID5B Monodelphis domestica ENSMODG00000017102 I 0.632
ENSMICG00000010866 Microcebus murinus ENSMICG00000010866 I 0.632
ARID5B Meleagris gallopavo ENSMGAG00000003626 I 0.632
ARID5B Myotis lucifugus ENSMLUG00000013447 I 0.632
zgc:77151 Danio rerio ENSDARG00000054307 I 0.628
ENSAMXG00000006897 Astyanax mexicanus ENSAMXG00000006897 I 0.628
ENSPFOG00000010024 Poecilia formosa ENSPFOG00000010024 I 0.628
ENSXMAG00000011937 Xiphophorus maculatus ENSXMAG00000011937 I 0.619
ENSPPYG00000002417 Pongo abelii ENSPPYG00000002417 I 0.614
ENSTNIG00000013457 Tetraodon nigroviridis ENSTNIG00000013457 I 0.605
ENSMEUG00000005354 Macropus eugenii ENSMEUG00000005354 I 0.595
NV18117 Nasonia vitripennis NV18117 I 0.591
SMAR000821 Strigamia maritima SMAR000821 I 0.589
ENSGACG00000015846 Gasterosteus aculeatus ENSGACG00000015846 I 0.587
ISCW010123 Ixodes scapularis ISCW010123 I 0.582
ENSBTAP00000026200-D1 Bos grunniens ENSBTAP00000026200-D1 I 0.575
Sakowv30045810m.g Saccoglossus kowalevskii Sakowv30045810m.g I 0.563
L798_01524 Zootermopsis nevadensis L798_01524 I 0.561
Hsal_01506--XP_395512.3_APIME Harpegnathos saltator Hsal_01506--XP_395512.3_APIME I 0.553
Cflo_07446--XP_395512.3_APIME Camponotus floridanus Cflo_07446--XP_395512.3_APIME I 0.553
GB52601 Apis mellifera GB52601 I 0.553
ENSPMAG00000009067 Petromyzon marinus ENSPMAG00000009067 I 0.543
ENSCING00000013307 Ciona intestinalis ENSCING00000013307 I 0.524
Ocbimv22018673m.g Octopus bimaculoides Ocbimv22018673m.g I 0.523
NEMVEDRAFT_v1g81183 Nematostella vectensis NEMVEDRAFT_v1g81183 I 0.493
e_gw.4.260.1_CONSTRUCT PBM CONSTRUCTS e_gw.4.260.1_CONSTRUCT D 0.493
SPU_011640 Strongylocentrotus purpuratus SPU_011640 I 0.492
ARID5A Oryctolagus cuniculus ENSOCUG00000012101 I 0.490
ENSLOCG00000012316 Lepisosteus oculatus ENSLOCG00000012316 I 0.485
tetur19g00310 Tetranychus urticae tetur19g00310 I 0.455
ENSSTOG00000023423 Ictidomys tridecemlineatus ENSSTOG00000023423 I 0.442
CapteG220448 Capitella teleta CapteG220448 I 0.437
ACEP16450 Atta cephalotes ACEP16450 I 0.437
SINV22144 Solenopsis invicta SINV22144 I 0.437
fgenesh2_pg.scaffold_164000022 Branchiostoma floridae fgenesh2_pg.scaffold_164000022 I 0.428
ARID5A Sorex araneus ENSSARG00000003004 I 0.288
ARID5A Microcebus murinus ENSMICG00000001964 I 0.288