RSKR_0000557500 (Rhabditophanes kr3021)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 RSKR_0000557500 T016670_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.728 0.860
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.663 0.721
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.663 0.721
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.663 0.721
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.663 0.721
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.663 0.721
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.663 0.721
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.656 0.384
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.644 0.721
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.639 0.698
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.639 0.698
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.639 0.698
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.639 0.698
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.616 0.640
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.527 0.326
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.494 0.314
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000557500.1 ARID/BRIGHT 217 303

Links

Other ARID/BRIGHT family TFs
Other Rhabditophanes kr3021 TFs

373 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G14600 Arabidopsis thaliana AT1G14600 D
AT2G02060 Arabidopsis thaliana AT2G02060 I
BGIOSGA007064 Oryza indica BGIOSGA007064 I
BGIOSGA008790 Oryza indica BGIOSGA008790 I
BGIOSGA011527 Oryza indica BGIOSGA011527 I
BGIOSGA016936 Oryza indica BGIOSGA016936 I
BGIOSGA023442 Oryza indica BGIOSGA023442 N
BGIOSGA031479 Oryza indica BGIOSGA031479 I
Bo5g019810 Brassica oleracea Bo5g019810 I
Bo7g080160 Brassica oleracea Bo7g080160 I
Bostr.0556s0031 Boechera stricta Bostr.0556s0031 I
Bostr.24340s0004 Boechera stricta Bostr.24340s0004 I
Bra024836 Brassica rapa Bra024836 I
Bra026202 Brassica rapa Bra026202 I
Bra026618 Brassica rapa Bra026618 I
BRADI1G32370 Brachypodium distachyon BRADI1G32370 N
Cagra.0549s0004 Capsella grandiflora Cagra.0549s0004 I
Cagra.3501s0036 Capsella grandiflora Cagra.3501s0036 I
Carubv10010057m.g Capsella rubella Carubv10010057m.g I
Carubv10017538m.g Capsella rubella Carubv10017538m.g I
Ca_00645 Cicer arietinum Ca_00645 I
Ciclev10018145m.g Citrus clementina Ciclev10018145m.g I
F775_02595 Aegilops tauschii F775_02595 N
F775_03870 Aegilops tauschii F775_03870 I
F775_04264 Aegilops tauschii F775_04264 I
fgenesh2_kg.1__1592__AT1G14600.1 Arabidopsis lyrata fgenesh2_kg.1__1592__AT1G14600.1 I
fgenesh2_kg.5__121__AT2G02060.1 Arabidopsis lyrata fgenesh2_kg.5__121__AT2G02060.1 I
GLYMA09G00685 Glycine max GLYMA09G00685 I
GLYMA15G11576 Glycine max GLYMA15G11576 I
Gorai.009G329400 Gossypium raimondii Gorai.009G329400 I
GRMZM2G069525 Zea mays GRMZM2G069525 I
GRMZM2G090230 Zea mays GRMZM2G090230 I
GRMZM2G100709 Zea mays GRMZM2G100709 N
GRMZM2G106185 Zea mays GRMZM2G106185 I
GRMZM2G374986 Zea mays GRMZM2G374986 I
GRMZM2G454449 Zea mays GRMZM2G454449 N
GRMZM5G887276 Zea mays GRMZM5G887276 I
GSMUA_Achr7G03510_001 Musa acuminata GSMUA_Achr7G03510_001 I
GSMUA_Achr9G30700_001 Musa acuminata GSMUA_Achr9G30700_001 I
LPERR02G22340 Leersia perrieri LPERR02G22340 I
LPERR03G02180 Leersia perrieri LPERR03G02180 I
LPERR04G17940 Leersia perrieri LPERR04G17940 I
LPERR06G20200 Leersia perrieri LPERR06G20200 N
LPERR10G13190 Leersia perrieri LPERR10G13190 I
MDP0000196504 Malus domestica MDP0000196504 I
MDP0000214282 Malus domestica MDP0000214282 I
mgf023762m Mimulus guttatus mgf023762m I
MLOC_53840 Hordeum vulgare MLOC_53840 N
MLOC_53958 Hordeum vulgare MLOC_53958 N
MLOC_56821 Hordeum vulgare MLOC_56821 I
MLOC_67085 Hordeum vulgare MLOC_67085 N
MTR_2g023580 Medicago truncatula MTR_2g023580 I
OB02G34860 Oryza brachyantha OB02G34860 I
OB03G12320 Oryza brachyantha OB03G12320 I
OB04G28940 Oryza brachyantha OB04G28940 I
OB06G32040 Oryza brachyantha OB06G32040 N
OB10G24340 Oryza brachyantha OB10G24340 I
OBART02G05200 Oryza barthii OBART02G05200 I
OBART02G27470 Oryza barthii OBART02G27470 I
OBART03G02370 Oryza barthii OBART03G02370 I
OBART04G21930 Oryza barthii OBART04G21930 I
OBART06G24290 Oryza barthii OBART06G24290 N
OBART10G17270 Oryza barthii OBART10G17270 I
OGLUM02G05030 Oryza glumaepatula OGLUM02G05030 I
OGLUM02G28020 Oryza glumaepatula OGLUM02G28020 I
OGLUM03G02310 Oryza glumaepatula OGLUM03G02310 I
OGLUM04G21960 Oryza glumaepatula OGLUM04G21960 I
OGLUM06G25550 Oryza glumaepatula OGLUM06G25550 N
OLONG_000346 Oryza longistaminata OLONG_000346 I
OLONG_004539 Oryza longistaminata OLONG_004539 I
OLONG_011732 Oryza longistaminata OLONG_011732 I
OLONG_016687 Oryza longistaminata OLONG_016687 I
OLONG_019167 Oryza longistaminata OLONG_019167 I
OLONG_026929 Oryza longistaminata OLONG_026929 N
OMERI02G26760 Oryza meridionalis OMERI02G26760 I
OMERI03G02220 Oryza meridionalis OMERI03G02220 I
OMERI04G18450 Oryza meridionalis OMERI04G18450 I
OMERI06G24530 Oryza meridionalis OMERI06G24530 N
OMERI10G13750 Oryza meridionalis OMERI10G13750 I
ONIVA02G05430 Oryza nivara ONIVA02G05430 I
ONIVA02G30300 Oryza nivara ONIVA02G30300 I
ONIVA03G01980 Oryza nivara ONIVA03G01980 I
ONIVA04G20480 Oryza nivara ONIVA04G20480 I
ONIVA06G30620 Oryza nivara ONIVA06G30620 N
ONIVA10G19340 Oryza nivara ONIVA10G19340 I
OPUNC02G04370 Oryza punctata OPUNC02G04370 I
OPUNC02G25130 Oryza punctata OPUNC02G25130 I
OPUNC03G02160 Oryza punctata OPUNC03G02160 I
OPUNC04G19690 Oryza punctata OPUNC04G19690 I
OPUNC06G22010 Oryza punctata OPUNC06G22010 N
OPUNC10G15550 Oryza punctata OPUNC10G15550 I
ORGLA02G0047700 Oryza glaberrima ORGLA02G0047700 I
ORGLA02G0236600 Oryza glaberrima ORGLA02G0236600 I
ORGLA03G0021400 Oryza glaberrima ORGLA03G0021400 I
ORGLA04G0189700 Oryza glaberrima ORGLA04G0189700 I
ORGLA06G0204400 Oryza glaberrima ORGLA06G0204400 N
ORGLA10G0122800 Oryza glaberrima ORGLA10G0122800 I
ORUFI02G05300 Oryza rufipogon ORUFI02G05300 I
ORUFI02G28930 Oryza rufipogon ORUFI02G28930 I
ORUFI03G02110 Oryza rufipogon ORUFI03G02110 I
ORUFI04G23540 Oryza rufipogon ORUFI04G23540 I
ORUFI06G26110 Oryza rufipogon ORUFI06G26110 N
ORUFI10G18320 Oryza rufipogon ORUFI10G18320 I
OS02G0168200 Oryza sativa OS02G0168200 I
OS04G0566600 Oryza sativa OS04G0566600 I
OS06G0670300 Oryza sativa OS06G0670300 N
Pavir.Aa00827 Panicum virgatum Pavir.Aa00827 I
Pavir.Ab02674 Panicum virgatum Pavir.Ab02674 I
Pavir.Da00200 Panicum virgatum Pavir.Da00200 N
Pavir.Db00422 Panicum virgatum Pavir.Db00422 N
Pavir.Gb01051 Panicum virgatum Pavir.Gb01051 I
Pavir.Ia04483 Panicum virgatum Pavir.Ia04483 I
Pavir.Ib00180 Panicum virgatum Pavir.Ib00180 I
Pavir.J09702 Panicum virgatum Pavir.J09702 I
Pavir.J33581 Panicum virgatum Pavir.J33581 I
PDK_20s1498711g001 Phoenix dactylifera PDK_20s1498711g001 I
POPTR_0008s14140 Populus trichocarpa POPTR_0008s14140 I
SapurV1A.0015s0960 Salix purpurea SapurV1A.0015s0960 I
Sb01g048420 Sorghum bicolor Sb01g048420 I
Sb04g032130 Sorghum bicolor Sb04g032130 I
Sb06g025600 Sorghum bicolor Sb06g025600 I
Sb10g026930 Sorghum bicolor Sb10g026930 N
SELMODRAFT_423935 Selaginella moellendorffii SELMODRAFT_423935 I
SELMODRAFT_424890 Selaginella moellendorffii SELMODRAFT_424890 I
Si007179m.g Setaria italica Si007179m.g N
Si011884m.g Setaria italica Si011884m.g I
Si019625m.g Setaria italica Si019625m.g I
Si036127m.g Setaria italica Si036127m.g I
Si039234m.g Setaria italica Si039234m.g I
Solyc02g080730.1 Solanum lycopersicum Solyc02g080730.1 I
Solyc02g080860.1 Solanum lycopersicum Solyc02g080860.1 I
TCM_001942 Theobroma cacao TCM_001942 I
Thhalv10004791m.g Eutrema salsugineum Thhalv10004791m.g I
Traes_1BL_E2629CBC1 Triticum aestivum Traes_1BL_E2629CBC1 I
Traes_7AL_9A1395EC7 Triticum aestivum Traes_7AL_9A1395EC7 I
Traes_7AL_BF6FD97DA Triticum aestivum Traes_7AL_BF6FD97DA N
Traes_7DL_FEA7D3672 Triticum aestivum Traes_7DL_FEA7D3672 N
TRIUR3_18158 Triticum urartu TRIUR3_18158 I
TRIUR3_18893 Triticum urartu TRIUR3_18893 N
TRIUR3_34172 Triticum urartu TRIUR3_34172 I
VIT_13s0067g01500 Vitis vinifera VIT_13s0067g01500 I