CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Sb04g037880 *(Sorghum bicolor)* AT hook
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02178 (AT_hook)	IPR017956	Sb04g037880	T017784_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
BRADI3G55950 M01673_2.00	Brachypodium distachyon	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH9369	0.991	1.000
OS02G0824300 M01688_2.00	Oryza sativa	NNDWAWWN	NWWTWHNN	PBM Weirauch et al.(2014) pTH8406	0.991	1.000
AHL13 M01672_2.00	Arabidopsis thaliana	NAWWTAWWWN	NWWWTAWWTN	PBM Weirauch et al.(2014) pTH8202	0.991	0.846
VIT_08s0007g04020 M01689_2.00	Vitis vinifera	DBNDDDDDDN	NHHHHHHNVH	PBM Weirauch et al.(2014) pTH9295	0.991	0.808
TVAG_474020 M01106_2.00	Trichomonas vaginalis	DNWWWAWW	WWTWWWNH	PBM Lambert et al.(2019) pTH11493	0.991	0.538
FGRRES_17512 M01105_2.00	Fusarium graminearum	NNNDNWWWW	WWWWNHNNN	PBM Lambert et al.(2019) pTH11412	0.991	0.500
SUM1 M00008_2.00	Saccharomyces cerevisiae	NNDWWWH	DWWWHNN	PBM Badis et al.(2008) SUM1_2124	0.991	0.462
SUM1 M07439_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0398.1	0.991	0.462
SUM1 M08478_2.00	Saccharomyces cerevisiae	RYGWCASWAAW	WTTWSTGWCRY	Misc DeBoer et al.(2011) YDR310C_383	0.991	0.462
SUM1 M08479_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	Misc DeBoer et al.(2011) YDR310C_478	0.991	0.462
MTR_4g101990 M01687_2.00	Medicago truncatula	AAAWTAAT	ATTAWTTT	PBM Weirauch et al.(2014) pTH9209	0.991	0.423
PK00377.1 M01107_2.00	Cannabis sativa	DAWWWAWW	WWTWWWTH	PBM Lambert et al.(2019) pTH11338	0.991	0.423
Q7DLU9_PEA M09772_2.00	Pisum sativum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HMGIY_01	0.991	0.423
HMGA1 M09769_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_01	0.991	0.410
HMGA1 M09770_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_Q4	0.991	0.410
ANIA_01690 M01675_2.00	Aspergillus nidulans	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH8216	0.991	0.405
ENSPPYG00000004736 M01685_2.00	Pongo abelii	NNNNDWWW	WWWHNNNN	PBM Weirauch et al.(2014) pTH9279	0.991	0.395
Hmga2 M00751_2.00	Mus musculus	NNNNRHWWNN	NNWWDYNNNN	PBM Weirauch et al.(2013) pTH3046	0.991	0.385
HMGA2 M09771_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGA2_01	0.991	0.385
BRADI5G22430 M01674_2.00	Brachypodium distachyon	VNRDDDHDD	HHDHHHYNB	PBM Weirauch et al.(2014) pTH9242	0.991	0.346
FGRRES_05233 M01104_2.00	Fusarium graminearum	NNNDWWAWWH	DWWTWWHNNN	PBM Lambert et al.(2019) pTH11377	0.991	0.333
Setbp1 M01683_2.00	Mus musculus	NDNNNNNNHN	NDNNNNNNHN	PBM Weirauch et al.(2014) pTH1294	0.991	0.308
Ahctf1 M00750_2.00	Mus musculus	AAAWAWAW	ATWTWTTT	PBM Weirauch et al.(2013) pTH2361	0.991	0.308
Xrp1 M01686_2.00	Drosophila melanogaster	NNNNDWAWW	WWTWHNNNN	PBM Weirauch et al.(2014) pTH9260	0.991	0.308
PK26376.1 M01108_2.00	Cannabis sativa	DDWWWAWW	WWTWWWHH	PBM Lambert et al.(2019) pTH11261	0.991	0.308
Xrp1 M05900_2.00	Drosophila melanogaster	RTKRYGYAAT	ATTRCRYMAY	B1H Zhu et al.(2011) Xrp1_CG6272_SANGER_5_FBgn0261113	0.991	0.308
NCU05635 M01694_2.00	Neurospora crassa	NNNWWWWNNN	NNNWWWWNNN	PBM Weirauch et al.(2014) pTH8863	0.991	0.289
ATEG_07399 M01676_2.00	Aspergillus terreus	DHNNHNDWWW	WWWHNDNNDH	PBM Weirauch et al.(2014) pTH9237	0.991	0.269
ENSACAG00000014978 M01677_2.00	Anolis carolinensis	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9222	0.991	0.269
phf21ab M01678_2.00	Danio rerio	NNNDNADW	WHTNHNNN	PBM Weirauch et al.(2014) pTH9254	0.991	0.269
kmt2cb M01679_2.00	Danio rerio	WWAWAWAT	ATWTWTWW	PBM Weirauch et al.(2014) pTH7876	0.991	0.269
phf21ab M01680_2.00	Gasterosteus aculeatus	AAAAWAAA	TTTWTTTT	PBM Weirauch et al.(2014) pTH9180	0.991	0.269
PHF21A M01681_2.00	Meleagris gallopavo	HDNHNNDNHD	HDNHNNDNHD	PBM Weirauch et al.(2014) pTH7875	0.991	0.269
PHF21A M01103_2.00	Monodelphis domestica	NNNAWATWAATN	NATTWATWTNNN	PBM Lambert et al.(2019) pTH9309	0.991	0.269
PHF21A M01682_2.00	Monodelphis domestica	NNNNNHRH	DYDNNNNN	PBM Weirauch et al.(2014) pTH9335	0.991	0.269
Phf21a M01684_2.00	Mus musculus	NNNATATWAATN	NATTWATATNNN	PBM Weirauch et al.(2014) pTH8550	0.991	0.269
HMGA M01671_2.00	Arabidopsis thaliana	NNNNDWAWH	DWTWHNNNN	PBM Weirauch et al.(2014) pTH7395	0.991	0.250
HMG-I Y M02652_2.00	Pisum sativum	NDWVAAANRVMRWMAY	RTKWYKBYNTTTBWHN	SELEX Mathelier et al.(2014) MA0045.1	0.991	0.250
estExt_fgeneshNG_pg.C_820014 M01692_2.00	Naegleria gruberi	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9380	0.991	0.231
NCU01145 M01693_2.00	Neurospora crassa	RWATAWWTNN	NNAWWTATWY	PBM Weirauch et al.(2014) pTH8916	0.991	0.226
athp-3 M01691_2.00	Caenorhabditis elegans	NNDDWDH	DHWHHNN	PBM Weirauch et al.(2014) pTH9097	0.991	0.210
hmg-12 M01690_2.00	Caenorhabditis elegans	NNAWWTAWWTNN	NNAWWTAWWTNN	PBM Weirauch et al.(2014) pTH8997	0.991	0.148
SUM1 M01517_2.00	Saccharomyces cerevisiae	NNNDWAWW	WWTWHNNN	PBM Zhu et al.(2009) Sum1	0.991	0.038
For this family, TFs with SR scores > 0.990* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Sb04g037880.1	AT hook	123	135	KKKRGRPRKYKPD
Sb04g037880.1	AT hook	184	196	KRGRGRPPGSGKM

Links
Other AT hook family TFs
Other *Sorghum bicolor* TFs

1072 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL002763	Aedes aegypti	AAEL002763	N
AAEL004799	Aedes aegypti	AAEL004799	N
AAEL015495	Aedes aegypti	AAEL015495	N
AATE004258	Anopheles atroparvus	AATE004258	N
AATE004381	Anopheles atroparvus	AATE004381	N
ACEP11966	Atta cephalotes	ACEP11966	N
ACOM042270	Anopheles coluzzii	ACOM042270	N
ACUA022483	Anopheles culicifacies	ACUA022483	N
ACUA027622	Anopheles culicifacies	ACUA027622	N
ACYPI006067	Acyrthosiphon pisum	ACYPI006067	N
AFAF002247	Anopheles farauti	AFAF002247	N
AFAF016561	Anopheles farauti	AFAF016561	N
AFUN003754	Anopheles funestus	AFUN003754	N
AFUN003758	Anopheles funestus	AFUN003758	N
AGAP002082	Anopheles gambiae	AGAP002082	N
AGAP002083	Anopheles gambiae	AGAP002083	I
AMAM007515	Anopheles maculatus	AMAM007515	N
AMAM023802	Anopheles maculatus	AMAM023802	N
AMEC016152	Anopheles melas	AMEC016152	N
AMEC018985	Anopheles melas	AMEC018985	N
AMEC019868	Anopheles melas	AMEC019868	N
AMEM000733	Anopheles merus	AMEM000733	N
AMEM001627	Anopheles merus	AMEM001627	N
ASIS002621	Anopheles sinensis	ASIS002621	N
ASIS011627	Anopheles sinensis	ASIS011627	N
Cflo_10706--XP_392003.1_APIME	Camponotus floridanus	Cflo_10706--XP_392003.1_APIME	N
CPIJ013161	Culex quinquefasciatus	CPIJ013161	N
CPIJ020207	Culex quinquefasciatus	CPIJ020207	N
CpipJ_CPIJ013161	Culex pipiens	CpipJ_CPIJ013161	N
CpipJ_CPIJ020207	Culex pipiens	CpipJ_CPIJ020207	N
GF17309	Drosophila ananassae	FBgn0094327	N
GH19280	Drosophila grimshawi	FBgn0126746	N
GI23490	Drosophila mojavensis	FBgn0146216	N
GM10491	Drosophila sechellia	FBgn0165439	N
GJ10241	Drosophila virilis	FBgn0197528	N
GK11085	Drosophila willistoni	FBgn0213096	N
GA26220	Drosophila pseudoobscura	FBgn0247595	I
rn	Drosophila melanogaster	FBgn0267337	D
GB54118	Apis mellifera	GB54118	N
L798_13150	Zootermopsis nevadensis	L798_13150	N
LLOJ002296	Lutzomyia longipalpis	LLOJ002296	N
MDOA008356	Musca domestica	MDOA008356	N
NV18441	Nasonia vitripennis	NV18441	N
RPRC000740	Rhodnius prolixus	RPRC000740	N
SINV21632	Solenopsis invicta	SINV21632	N
SMAR014468	Strigamia maritima	SMAR014468	N
TC016018	Tribolium castaneum	TC016018	N
YQE_06536	Dendroctonus ponderosae	YQE_06536	N

Sb04g037880 (Sorghum bicolor) AT hook

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1072 Related TFs

Sb04g037880 **(Sorghum bicolor)
AT hook**