Carubv10013145m.g (Capsella rubella)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Carubv10013145m.g T028223_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10013143m BED ZF 17 68
Carubv10013145m BED ZF 17 68

Links

Other BED ZF family TFs
Other Capsella rubella TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_039_00001 Aquilegia coerulea Aquca_039_00001 N 0.727
Bo1g129970 Brassica oleracea Bo1g129970 N 1.000
Bo9g044150 Brassica oleracea Bo9g044150 N 0.955
Bostr.28625s0227 Boechera stricta Bostr.28625s0227 N 1.000
Cagra.0007s0024 Capsella grandiflora Cagra.0007s0024 N 1.000
cassava7664.valid.m1 Manihot esculenta cassava7664.valid.m1 N 0.841
cassava7665.valid.m1 Manihot esculenta cassava7665.valid.m1 N 0.841
Cucsa.057910 Cucumis sativus Cucsa.057910 N 0.795
Eucgr.K01194 Eucalyptus grandis Eucgr.K01194 N 0.727
gene27341-v1.0-hybrid Fragaria vesca gene27341-v1.0-hybrid N 0.750
GLYMA09G15135 Glycine max GLYMA09G15135 N 0.773
GLYMA15G27362 Glycine max GLYMA15G27362 N 0.773
Gorai.004G271300 Gossypium raimondii Gorai.004G271300 N 0.795
Gorai.007G331900 Gossypium raimondii Gorai.007G331900 N 0.773
Lus10005558.g Linum usitatissimum Lus10005558.g N 0.773
PGSC0003DMG400021296 Solanum tuberosum PGSC0003DMG400021296 N 0.773
PK12364.1 Cannabis sativa PK12364.1 N 0.750
PK13949.1 Cannabis sativa PK13949.1 N 0.705
Pm011252 Prunus mume Pm011252 N 0.773
POPTR_0001s39240 Populus trichocarpa POPTR_0001s39240 N 0.750
POPTR_0011s10500 Populus trichocarpa POPTR_0011s10500 N 0.750
PRUPE_ppa002416mg Prunus persica PRUPE_ppa002416mg N 0.773
SapurV1A.0020s0660 Salix purpurea SapurV1A.0020s0660 N 0.750
SapurV1A.0026s0130 Salix purpurea SapurV1A.0026s0130 N 0.727
Solyc10g007470.2 Solanum lycopersicum Solyc10g007470.2 N 0.773
TCM_032128 Theobroma cacao TCM_032128 N 0.818
Thhalv10020233m.g Eutrema salsugineum Thhalv10020233m.g N 1.000
VIT_12s0142g00390 Vitis vinifera VIT_12s0142g00390 N 0.727
VIT_19s0014g00320 Vitis vinifera VIT_19s0014g00320 N 0.795