PGSC0003DMG400021296 (Solanum tuberosum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 PGSC0003DMG400021296 T027245_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400054863 BED ZF 17 65

Links

Other BED ZF family TFs
Other Solanum tuberosum TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc10g007470.2 Solanum lycopersicum Solyc10g007470.2 N 1.000
Cucsa.057910 Cucumis sativus Cucsa.057910 N 0.955
GLYMA09G15135 Glycine max GLYMA09G15135 N 0.932
GLYMA15G27362 Glycine max GLYMA15G27362 N 0.932
PRUPE_ppa002416mg Prunus persica PRUPE_ppa002416mg N 0.932
TCM_032128 Theobroma cacao TCM_032128 N 0.932
Pm011252 Prunus mume Pm011252 N 0.932
Gorai.007G331900 Gossypium raimondii Gorai.007G331900 N 0.932
POPTR_0001s39240 Populus trichocarpa POPTR_0001s39240 N 0.909
VIT_19s0014g00320 Vitis vinifera VIT_19s0014g00320 N 0.909
gene27341-v1.0-hybrid Fragaria vesca gene27341-v1.0-hybrid N 0.909
Lus10005558.g Linum usitatissimum Lus10005558.g N 0.909
SapurV1A.0020s0660 Salix purpurea SapurV1A.0020s0660 N 0.909
PK12364.1 Cannabis sativa PK12364.1 N 0.909
POPTR_0011s10500 Populus trichocarpa POPTR_0011s10500 N 0.886
Gorai.004G271300 Gossypium raimondii Gorai.004G271300 N 0.864
SapurV1A.0026s0130 Salix purpurea SapurV1A.0026s0130 N 0.864
cassava7664.valid.m1 Manihot esculenta cassava7664.valid.m1 N 0.841
cassava7665.valid.m1 Manihot esculenta cassava7665.valid.m1 N 0.841
Bo1g129970 Brassica oleracea Bo1g129970 N 0.773
Bostr.28625s0227 Boechera stricta Bostr.28625s0227 N 0.773
Cagra.0007s0024 Capsella grandiflora Cagra.0007s0024 N 0.773
Carubv10013145m.g Capsella rubella Carubv10013145m.g N 0.773
Thhalv10020233m.g Eutrema salsugineum Thhalv10020233m.g N 0.773
PRUPE_ppa002590mg Prunus persica PRUPE_ppa002590mg N 0.738
Pm014562 Prunus mume Pm014562 N 0.738
gene24495-v1.0-hybrid Fragaria vesca gene24495-v1.0-hybrid N 0.738
Bo9g044150 Brassica oleracea Bo9g044150 N 0.727