Pavir.J00513 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.J00513 T028530_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J00513.1.p BED ZF 27 73

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG013447.1 Alligator sinensis Alligator_sinensis_CCG013447.1 I
B39674 Xenopus laevis B39674 I
ENSAMEG00000015606 Ailuropoda melanoleuca ENSAMEG00000015606 I
USF1 Bos taurus ENSBTAG00000017873 I
USF1 Canis familiaris ENSCAFG00000012689 I
USF1 Choloepus hoffmanni ENSCHOG00000011010 I
USF1 Callithrix jacchus ENSCJAG00000005396 I
USF1 Cavia porcellus ENSCPOG00000003957 I
ENSCSAG00000002622 Chlorocebus sabaeus ENSCSAG00000002622 I
ARHGAP30 Dasypus novemcinctus ENSDNOG00000005811 I
USF1 Equus caballus ENSECAG00000004755 I
USF1 Felis catus ENSFCAG00000012307 I
USF1 Homo sapiens ENSG00000158773 D
ENSLACG00000001157 Latimeria chalumnae ENSLACG00000001157 I
USF1 Loxodonta africana ENSLAFG00000011338 I
ENSLOCG00000000641 Lepisosteus oculatus ENSLOCG00000000641 I
ENSMEUG00000009683 Macropus eugenii ENSMEUG00000009683 I
USF1 Microcebus murinus ENSMICG00000007199 I
USF1 Myotis lucifugus ENSMLUG00000009179 I
USF1 Macaca mulatta ENSMMUG00000002003 I
ENSMMUP00000002682 Macaca fascicularis ENSMMUP00000002682 I
USF1 Monodelphis domestica ENSMODG00000005443 I
ENSMPUG00000014181 Mustela putorius furo ENSMPUG00000014181 I
Usf1 Mus musculus ENSMUSG00000026641 D
ENSNLEG00000013935 Nomascus leucogenys ENSNLEG00000013935 I
ENSOARG00000003162 Ovis aries ENSOARG00000003162 I
ENSOARG00000009376 Ovis aries ENSOARG00000009376 I
USF1 Oryctolagus cuniculus ENSOCUG00000002352 I
ENSOGAG00000006705 Otolemur garnettii ENSOGAG00000006705 I
ENSONIG00000016360 Oreochromis niloticus ENSONIG00000016360 I
USF1 Ochotona princeps ENSOPRG00000003858 I
ENSP00000357000-D1 Bos grunniens ENSP00000357000-D1 I
ENSPANG00000016141 Papio anubis ENSPANG00000016141 I
ENSPPYG00000000619 Pongo abelii ENSPPYG00000000619 I
ENSPSIG00000008116 Pelodiscus sinensis ENSPSIG00000008116 I
USF1 Pan troglodytes ENSPTRG00000001565 I
USF1 Pteropus vampyrus ENSPVAG00000005489 I
Usf1 Rattus norvegicus ENSRNOG00000004255 I
ENSSHAG00000016124 Sarcophilus harrisii ENSSHAG00000016124 I
USF1 Sus scrofa ENSSSCG00000006371 I
ENSSTOG00000012364 Ictidomys tridecemlineatus ENSSTOG00000012364 I
USF1 Tupaia belangeri ENSTBEG00000003164 I
USF1 Tursiops truncatus ENSTTRG00000009151 I
USF1 Vicugna pacos ENSVPAG00000008421 I
Ogr08237 Ophisaurus gracilis Ogr08237 I
PHUM287950 Pediculus humanus PHUM287950 I
Pvit_07548 Pogona vitticeps Pvit_07548 I
usf1 Xenopus tropicalis XB-GENE-5918718 I
usf1.S Xenopus laevis XB-GENE-6255904 I