Pavir.J03423 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.J03423 T028534_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J03423.1.p BED ZF 29 77

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL009092 Aedes aegypti AAEL009092 N
AAL89720 Xenopus laevis AAL89720 N
ACYPI008958 Acyrthosiphon pisum ACYPI008958 N
AFAF012002 Anopheles farauti AFAF012002 N
Afo_R008528 Aptenodytes forsteri Afo_R008528 N
AGAP001761 Anopheles gambiae AGAP001761 N
Alligator_sinensis_CCG000180.1 Alligator sinensis Alligator_sinensis_CCG000180.1 N
Alligator_sinensis_CCG004678.1 Alligator sinensis Alligator_sinensis_CCG004678.1 N
AMEM008456 Anopheles merus AMEM008456 N
Cflo_01607--XP_001123059.1_APIME Camponotus floridanus Cflo_01607--XP_001123059.1_APIME N
CLEC001936 Cimex lectularius CLEC001936 N
ENSAMXG00000012483 Astyanax mexicanus ENSAMXG00000012483 N
lag1-like1 Ciona intestinalis ENSCING00000006059 N
ENSCSAVG00000009299 Ciona savignyi ENSCSAVG00000009299 N
ENSCSAVG00000011823 Ciona savignyi ENSCSAVG00000011823 N
cers3b Danio rerio ENSDARG00000036337 N
ENSGACG00000002760 Gasterosteus aculeatus ENSGACG00000002760 N
ENSGMOG00000018099 Gadus morhua ENSGMOG00000018099 N
ENSLOCG00000004390 Lepisosteus oculatus ENSLOCG00000004390 N
ENSMGAG00000017003 Meleagris gallopavo ENSMGAG00000017003 N
ENSMICG00000014767 Microcebus murinus ENSMICG00000014767 N
ENSMICG00000017321 Microcebus murinus ENSMICG00000017321 N
ENSMODG00000004533 Monodelphis domestica ENSMODG00000004533 N
ENSMODG00000004875 Monodelphis domestica ENSMODG00000004875 N
ENSMODG00000004916 Monodelphis domestica ENSMODG00000004916 N
ENSOARG00000017904 Ovis aries ENSOARG00000017904 N
ENSONIG00000017329 Oreochromis niloticus ENSONIG00000017329 N
ENSONIG00000019701 Oreochromis niloticus ENSONIG00000019701 N
CERS5 Oryzias latipes ENSORLG00000010219 N
ENSPFOG00000013551 Poecilia formosa ENSPFOG00000013551 N
ENSPMAG00000008848 Petromyzon marinus ENSPMAG00000008848 N
ENSSHAG00000001540 Sarcophilus harrisii ENSSHAG00000001540 N
ENSSHAG00000001747 Sarcophilus harrisii ENSSHAG00000001747 N
ENSSHAG00000003870 Sarcophilus harrisii ENSSHAG00000003870 N
cers2a Tetraodon nigroviridis ENSTNIG00000017545 N
CERS5 Tetraodon nigroviridis ENSTNIG00000017897 N
cers4b Takifugu rubripes ENSTRUG00000000191 N
CERS5 Takifugu rubripes ENSTRUG00000010435 N
cers2a Takifugu rubripes ENSTRUG00000012292 N
ENSXMAG00000010322 Xiphophorus maculatus ENSXMAG00000010322 N
estExt_gwp.C_860189 Branchiostoma floridae estExt_gwp.C_860189 N
e_gw.479.83.1 Branchiostoma floridae e_gw.479.83.1 N
HelroG82517 Helobdella robusta HelroG82517 N
Hsal_14209--XP_001123059.1_APIME Harpegnathos saltator Hsal_14209--XP_001123059.1_APIME N
KGM_16996 Danaus plexippus KGM_16996 N
L798_00373 Zootermopsis nevadensis L798_00373 N
LDEC003623 Leptinotarsa decemlineata LDEC003623 N
LotgiG226091 Lottia gigantea LotgiG226091 N
MCINX005367 Melitaea cinxia MCINX005367 N
Myotis_brandtii_Lass6_10034918 Myotis brandtii Myotis_brandtii_Lass6_10034918 N
Ocbimv22016239m.g Octopus bimaculoides Ocbimv22016239m.g N
RPRC008736 Rhodnius prolixus RPRC008736 N
Sakowv30024320m.g Saccoglossus kowalevskii Sakowv30024320m.g N
SINV20227 Solenopsis invicta SINV20227 N
SINV24013 Solenopsis invicta SINV24013 N
cers3.L Xenopus laevis XB-GENE-6251639 N
cers5.S Xenopus laevis XB-GENE-866438 N