CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.J03423
(
Panicum virgatum
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
Pavir.J03423
T028534_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J03423.1.p
BED ZF
29
77
AKVWAYVDTELIDGVEKAVCKYCKLQLSSVPGKGTTHLNRHIGYYCHHI
Links
Other
BED ZF
family TFs
Other
Panicum virgatum
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Eb03203
Panicum virgatum
Pavir.Eb03203
N
1.000
Pavir.J21810
Panicum virgatum
Pavir.J21810
N
0.977
Sb07g006875
Sorghum bicolor
Sb07g006875
N
0.841
Pavir.Ia00801
Panicum virgatum
Pavir.Ia00801
N
0.706