tfe3a (Takifugu rubripes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTRUG00000005584 T037843_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TFE3
M02773_2.00 		Homo sapiens
VNCACGTGMY
RKCACGTGNB		 SELEX
Jolma et al.(2013)
TFE3_1 		0.914 0.981
TFE3
M04058_2.00 		Homo sapiens
YVCACGTGAYN
NRTCACGTGBR		 SELEX
Yin et al.(2017)
TFE3_eDBD_HT-SELEX 		0.914 0.981
TFE3
M08709_2.00 		Homo sapiens
TCACGTGACH
DGTCACGTGA		 Misc
Kulakovskiy et al.(2013)
TFE3_HUMAN.H11MO.0.B 		0.914 0.981
TFE3
M09790_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TFEA_Q6 		0.914 0.981
TFE3
M04059_2.00 		Homo sapiens
NRTCACATGBB
VVCATGTGAYN		 SELEX
Yin et al.(2017)
TFE3_eDBD_Methyl-HT-SELEX 		0.914 0.981
Tfe3
M01715_2.00 		Mus musculus
NCDCRTGAYN
NRTCAYGHGN		 PBM
Weirauch et al.(2014)
pTH5057 		0.871 0.963
Tfe3
M05833_2.00 		Mus musculus
CACGTGAY
RTCACGTG		 SMiLE-seq
Isakova et al.(2017)
TFE3 		0.871 0.963
Tfe3
M08743_2.00 		Mus musculus
TCACGTGACH
DGTCACGTGA		 Misc
Kulakovskiy et al.(2013)
TFE3_MOUSE.H11MO.0.A 		0.871 0.963
Tfe3
M09884_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TFEA_01 		0.871 0.963
Mitf
M01741_2.00 		Mus musculus
NCDCGTGAYN
NRTCACGHGN		 PBM
Weirauch et al.(2014)
pTH5465 		0.871 0.944
MITF
M08058_2.00 		Homo sapiens
NNNDRTCACGTGAYHNNN
NNNDRTCACGTGAYHNNN		 ChIP-seq
Mathelier et al.(2014)
MA0620.2 		0.871 0.944
MITF
M08740_2.00 		Homo sapiens
YCAYGTGACH
DGTCACRTGR		 Misc
Kulakovskiy et al.(2013)
MITF_HUMAN.H11MO.0.A 		0.871 0.944
Mitf
M08765_2.00 		Mus musculus
BCHYGTGACY
RGTCACRDGV		 Misc
Kulakovskiy et al.(2013)
MITF_MOUSE.H11MO.0.A 		0.871 0.944
Mitf
M09475_2.00 		Mus musculus
GTCACRWGVB
VBCWYGTGAC		 Misc
Heinz et al.(2010)
MastCells-MITF_GSE48085 		0.871 0.944
MITF
M09880_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MITF_Q4 		0.871 0.944
MITF
M09881_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MITF_Q6 		0.871 0.944
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000013460 bHLH 288 341
ENSTRUP00000013461 bHLH 289 342
ENSTRUP00000013462 bHLH 304 357
ENSTRUP00000013463 bHLH 199 252

Links

Other bHLH family TFs
Other Takifugu rubripes TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA026486 Oryza indica BGIOSGA026486 N 0.000
BGIOSGA035191 Oryza indica BGIOSGA035191 N 0.000
BRADI3G43000 Brachypodium distachyon BRADI3G43000 N 0.000
F775_22386 Aegilops tauschii F775_22386 N 0.000
GRMZM2G171934 Zea mays GRMZM2G171934 N 0.000
MLOC_23439 Hordeum vulgare MLOC_23439 N 0.000
OB08G30470 Oryza brachyantha OB08G30470 N 0.000
OBART08G23610 Oryza barthii OBART08G23610 N 0.000
OBART11G11470 Oryza barthii OBART11G11470 N 0.000
OGLUM08G25080 Oryza glumaepatula OGLUM08G25080 N 0.000
OGLUM11G11350 Oryza glumaepatula OGLUM11G11350 N 0.000
OLONG_020563 Oryza longistaminata OLONG_020563 N 0.000
OMERI08G18450 Oryza meridionalis OMERI08G18450 N 0.000
ONIVA07G06150 Oryza nivara ONIVA07G06150 N 0.000
ONIVA08G26670 Oryza nivara ONIVA08G26670 N 0.000
OPUNC08G21610 Oryza punctata OPUNC08G21610 N 0.000
ORGLA08G0190300 Oryza glaberrima ORGLA08G0190300 N 0.000
ORUFI08G26100 Oryza rufipogon ORUFI08G26100 N 0.000
ORUFI11G12030 Oryza rufipogon ORUFI11G12030 N 0.000
OS08G0560300 Oryza sativa OS08G0560300 N 0.000
OS11G0428700 Oryza sativa OS11G0428700 N 0.000
Pavir.Fa00017 Panicum virgatum Pavir.Fa00017 N 0.000
Pavir.Fb02226 Panicum virgatum Pavir.Fb02226 N 0.000
Sb07g024020 Sorghum bicolor Sb07g024020 N 0.000
Traes_7AS_9EA289C71 Triticum aestivum Traes_7AS_9EA289C71 N 0.000
Traes_7DS_620E0D488 Triticum aestivum Traes_7DS_620E0D488 N 0.000
TRIUR3_34039 Triticum urartu TRIUR3_34039 N 0.000