fgenesh2_kg.108__1__AT2G40200.1 (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 fgenesh2_kg.108__1__AT2G40200.1 T039099_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK01630.1
M01118_2.00 		Cannabis sativa
GCACGTGD
HCACGTGC		 PBM
Lambert et al.(2019)
pTH11426 		0.845 0.776
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.108__1__AT2G40200.1 bHLH 63 111

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000735 Ricinus communis 29814.m000735 I 0.845
BHLH51 Arabidopsis thaliana AT2G40200 N 0.893
Bo3g034790 Brassica oleracea Bo3g034790 N 0.863
Bo4g188890 Brassica oleracea Bo4g188890 N 0.893
Bostr.23794s0037 Boechera stricta Bostr.23794s0037 N 0.893
Bra000177 Brassica rapa Bra000177 I 0.884
Bra017024 Brassica rapa Bra017024 N 0.893
Cagra.7053s0004 Capsella grandiflora Cagra.7053s0004 N 0.893
Carubv10023707m.g Capsella rubella Carubv10023707m.g N 0.893
cassava37862.valid.m1 Manihot esculenta cassava37862.valid.m1 I 0.845
Ca_13402 Cicer arietinum Ca_13402 I 0.845
Ciclev10032356m.g Citrus clementina Ciclev10032356m.g I 0.845
Cla006707 Citrullus lanatus Cla006707 I 0.845
Cucsa.136730 Cucumis sativus Cucsa.136730 I 0.845
Eucgr.J00190 Eucalyptus grandis Eucgr.J00190 I 0.845
evm.TU.supercontig_19.156 Carica papaya evm.TU.supercontig_19.156 I 0.845
fgenesh2_kg.4__2126__AT2G40200.1 Arabidopsis lyrata fgenesh2_kg.4__2126__AT2G40200.1 N 0.890
gene21000-v1.0-hybrid Fragaria vesca gene21000-v1.0-hybrid I 0.845
GLYMA11G35480 Glycine max GLYMA11G35480 I 0.845
GLYMA18G02940 Glycine max GLYMA18G02940 I 0.845
Gorai.011G292100 Gossypium raimondii Gorai.011G292100 I 0.866
Lus10007502.g Linum usitatissimum Lus10007502.g I 0.845
Lus10028978.g Linum usitatissimum Lus10028978.g I 0.845
MTR_3g070970 Medicago truncatula MTR_3g070970 I 0.845
orange1.1g023629m.g Citrus sinensis orange1.1g023629m.g I 0.845
PK01630.1 Cannabis sativa PK01630.1 D 0.845
Pm018950 Prunus mume Pm018950 I 0.845
POPTR_0008s07090 Populus trichocarpa POPTR_0008s07090 I 0.845
POPTR_0010s19400 Populus trichocarpa POPTR_0010s19400 I 0.848
PRUPE_ppa010134mg Prunus persica PRUPE_ppa010134mg I 0.845
SapurV1A.0061s0470 Salix purpurea SapurV1A.0061s0470 I 0.845
TCM_042475 Theobroma cacao TCM_042475 I 0.845
Thhalv10017126m.g Eutrema salsugineum Thhalv10017126m.g N 0.863
VIT_13s0067g01350 Vitis vinifera VIT_13s0067g01350 I 0.845