hlh-25 (Caenorhabditis elegans)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 WBGene00001964 T046287_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
hlh-25
M00932_2.00		 Caenorhabditis elegans
CGCRTGKB
VMCAYGCG		 PBM
Grove et al.(2009)
HLH25		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HLH27
M00928_2.00 		Caenorhabditis elegans
CGCRTGKC
GMCAYGCG		 PBM
Grove et al.(2009)
HLH27 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00932_2.00 bHLH 19 66
M00932_2.00 bHLH 93 150

DNA Binding Domains

Protein ID Domain From To Sequence
C17C3.7 bHLH 19 66
C17C3.7 bHLH 93 150

Links

Other bHLH family TFs
Other Caenorhabditis elegans TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
71265 Aureococcus anophagefferens 71265 N
AGABI2DRAFT_226270 Agaricus bisporus AGABI2DRAFT_226270 I
ALNC14_005160 Albugo laibachii ALNC14_005160 N
ALNC14_059320 Albugo laibachii ALNC14_059320 N
ALNC14_105430 Albugo laibachii ALNC14_105430 N
DACRYDRAFT_21288 Dacryopinax sp DACRYDRAFT_21288 I
estExt_fgenesh1_kg.C_18600002 Phytophthora capsici estExt_fgenesh1_kg.C_18600002 N
estExt_fgenesh2_pm.C_560011 Fragilariopsis cylindrus estExt_fgenesh2_pm.C_560011 N
estExt_Genewise1.C_61306 Fragilariopsis cylindrus estExt_Genewise1.C_61306 N
EuGene.0200010072 Micromonas sp RCC299 EuGene.0200010072 I
e_gw1.31.51.1 Fragilariopsis cylindrus e_gw1.31.51.1 N
e_gw1.56.45.1 Fragilariopsis cylindrus e_gw1.56.45.1 N
F443_12676 Phytophthora parasitica F443_12676 N
fgenesh_scip_prom.28083.6132 Phytophthora lateralis fgenesh_scip_prom.28083.6132 N
fgenesh_scip_prom.46568.615 Phytophthora kernoviae fgenesh_scip_prom.46568.615 N
gw1.7.507.1 Phytophthora capsici gw1.7.507.1 N
HpaG812965 Hyaloperonospora arabidopsidis HpaG812965 N
maker-pag1_scaffold_219-snap-gene-0.16 Pythium aphanidermatum maker-pag1_scaffold_219-snap-gene-0.16 I
maker-par_contig_3120-fgenesh-gene-0.1 Pythium arrhenomanes maker-par_contig_3120-fgenesh-gene-0.1 I
maker-pir_contig_16-fgenesh-gene-0.1 Pythium irregulare maker-pir_contig_16-fgenesh-gene-0.1 N
maker-piw_contig_424-fgenesh-gene-0.5 Pythium iwayamai maker-piw_contig_424-fgenesh-gene-0.5 N
maker-pve_contig_139-fgenesh-gene-0.10 Pythium vexans maker-pve_contig_139-fgenesh-gene-0.10 N
Phatr3_J33380 Phaeodactylum tricornutum Phatr3_J33380 N
Phatr3_J33622 Phaeodactylum tricornutum Phatr3_J33622 N
Phatr3_J34724 Phaeodactylum tricornutum Phatr3_J34724 N
Phatr3_J42824 Phaeodactylum tricornutum Phatr3_J42824 N
Phatr3_J44029 Phaeodactylum tricornutum Phatr3_J44029 N
HSF3 Phaeodactylum tricornutum Phatr3_J44200 N
Phatr3_J45112 Phaeodactylum tricornutum Phatr3_J45112 N
Phyra78686 Phytophthora ramorum Phyra78686 N
Physo135389 Phytophthora sojae Physo135389 N
PITG_08199 Phytophthora infestans PITG_08199 N
PYU1_G011054 Pythium ultimum PYU1_G011054 N
Thaps24112 Thalassiosira pseudonana Thaps24112 N
Thaps269474 Thalassiosira pseudonana Thaps269474 N