Pm026389 (Prunus mume)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pm026389 T047665_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.914 0.960
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.885 0.640
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.885 0.580
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.877 0.840
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.877 0.820
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.877 0.820
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.877 0.820
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.877 0.820
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.877 0.820
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.857 0.780
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.851 0.500
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.851 0.500
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.851 0.500
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.844 0.760
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.844 0.760
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.844 0.780
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.844 0.780
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.844 0.780
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm026389 bHLH 159 208

Links

Other bHLH family TFs
Other Prunus mume TFs

552 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013408 Aedes aegypti AAEL013408 I
AALB004583 Anopheles albimanus AALB004583 I
Aan_R010721 Calypte anna Aan_R010721 I
AARA003510 Anopheles arabiensis AARA003510 I
AATE015987 Anopheles atroparvus AATE015987 I
ACEP13992 Atta cephalotes ACEP13992 I
ACHR007416 Anopheles christyi ACHR007416 I
ACOM036369 Anopheles coluzzii ACOM036369 I
ACUA011008 Anopheles culicifacies ACUA011008 I
ADAC006957 Anopheles darlingi ADAC006957 I
AEPI005273 Anopheles epiroticus AEPI005273 I
Afo_R011879 Aptenodytes forsteri Afo_R011879 I
AFUN005053 Anopheles funestus AFUN005053 I
AGAP004905 Anopheles gambiae AGAP004905 I
Alligator_sinensis_CCG021031.1 Alligator sinensis Alligator_sinensis_CCG021031.1 I
AMAM018568 Anopheles maculatus AMAM018568 I
AMEC000569 Anopheles melas AMEC000569 I
AMEM010249 Anopheles merus AMEM010249 I
AMIN011402 Anopheles minimus AMIN011402 I
AQUA000322 Anopheles quadriannulatus AQUA000322 I
ASIS014192 Anopheles sinensis ASIS014192 I
ASTEI10643 Anopheles stephensi ASTEI10643 I
BGIBMGA002019 Bombyx mori BGIBMGA002019 I
BGLB009094 Biomphalaria glabrata BGLB009094 I
Brh_R009745 Buceros rhinoceros Brh_R009745 I
CapteG228571 Capitella teleta CapteG228571 I
Cflo_07037--XP_395757.2_APIME Camponotus floridanus Cflo_07037--XP_395757.2_APIME I
CGI_10012910 Crassostrea gigas CGI_10012910 I
Cmyd_10004045 Chelonia mydas Cmyd_10004045 I
CPIJ007045 Culex quinquefasciatus CPIJ007045 I
CpipJ_CPIJ007045 Culex pipiens CpipJ_CPIJ007045 I
DEAF1 Anolis carolinensis ENSACAG00000015102 I
ENSAMEG00000010672 Ailuropoda melanoleuca ENSAMEG00000010672 I
ENSAMXG00000016516 Astyanax mexicanus ENSAMXG00000016516 I
ENSAPLG00000011215 Anas platyrhynchos ENSAPLG00000011215 I
DEAF1 Canis familiaris ENSCAFG00000006569 I
DEAF1 Callithrix jacchus ENSCJAG00000011996 I
DEAF1 Cavia porcellus ENSCPOG00000006073 I
ENSCSAG00000010763 Chlorocebus sabaeus ENSCSAG00000010763 I
deaf1 Danio rerio ENSDARG00000088844 I
DEAF1 Dasypus novemcinctus ENSDNOG00000000274 I
Deaf1 Dipodomys ordii ENSDORG00000015737 I
DEAF1 Equus caballus ENSECAG00000010151 I
ENSFALG00000010923 Ficedula albicollis ENSFALG00000010923 I
DEAF1 Felis catus ENSFCAG00000007591 I
DEAF1 Homo sapiens ENSG00000177030 I
deaf1 Gasterosteus aculeatus ENSGACG00000008942 I
ENSGALG00000005089 Gallus gallus ENSGALG00000005089 I
DEAF1 Gorilla gorilla ENSGGOG00000014020 I
ENSGMOG00000000222 Gadus morhua ENSGMOG00000000222 I
ENSLACG00000014207 Latimeria chalumnae ENSLACG00000014207 I
DEAF1 Loxodonta africana ENSLAFG00000023242 I
ENSLOCG00000002360 Lepisosteus oculatus ENSLOCG00000002360 I
ENSMEUG00000005016 Macropus eugenii ENSMEUG00000005016 I
DEAF1 Meleagris gallopavo ENSMGAG00000003765 I
DEAF1 Microcebus murinus ENSMICG00000001602 I
DEAF1 Myotis lucifugus ENSMLUG00000026576 I
DEAF1 Macaca mulatta ENSMMUG00000002660 I
ENSMPUG00000008992 Mustela putorius furo ENSMPUG00000008992 I
Deaf1 Mus musculus ENSMUSG00000058886 I
ENSNLEG00000008479 Nomascus leucogenys ENSNLEG00000008479 I
ENSOARG00000006285 Ovis aries ENSOARG00000006285 I
DEAF1 Otolemur garnettii ENSOGAG00000006434 I
ENSONIG00000003936 Oreochromis niloticus ENSONIG00000003936 I
ENSOPRG00000002240 Ochotona princeps ENSOPRG00000002240 I
deaf1 Oryzias latipes ENSORLG00000019407 I
ENSP00000371846 Macaca fascicularis ENSP00000371846 I
ENSP00000371846-D1 Bos grunniens ENSP00000371846-D1 I
ENSPFOG00000014257 Poecilia formosa ENSPFOG00000014257 I
ENSPMAG00000004264 Petromyzon marinus ENSPMAG00000004264 I
ENSPSIG00000016545 Pelodiscus sinensis ENSPSIG00000016545 I
DEAF1 Pan troglodytes ENSPTRG00000003129 D
DEAF1 Pteropus vampyrus ENSPVAG00000006883 I
Deaf1 Rattus norvegicus ENSRNOG00000017960 I
ENSSHAG00000002042 Sarcophilus harrisii ENSSHAG00000002042 I
DEAF1 Sus scrofa ENSSSCG00000012850 I
ENSSTOG00000004165 Ictidomys tridecemlineatus ENSSTOG00000004165 I
ENSTBEG00000010230 Tupaia belangeri ENSTBEG00000010230 I
DEAF1 Taeniopygia guttata ENSTGUG00000007185 I
deaf1 Tetraodon nigroviridis ENSTNIG00000016068 I
deaf1 Takifugu rubripes ENSTRUG00000002931 I
DEAF1 Tursiops truncatus ENSTTRG00000015418 I
ENSXMAG00000013352 Xiphophorus maculatus ENSXMAG00000013352 I
fgenesh2_pg.scaffold_59000067 Branchiostoma floridae fgenesh2_pg.scaffold_59000067 I
fgenesh2_pg.scaffold_59000072 Branchiostoma floridae fgenesh2_pg.scaffold_59000072 I
GB41654 Apis mellifera GB41654 I
Gfo_R011899 Geospiza fortis Gfo_R011899 I
HHAL006904-PA Halyomorpha halys HHAL006904-PA I
HMEL013517 Heliconius melpomene HMEL013517 I
Hsal_03559--XP_395757.2_APIME Harpegnathos saltator Hsal_03559--XP_395757.2_APIME I
ISCW003915 Ixodes scapularis ISCW003915 I
KGM_18605 Danaus plexippus KGM_18605 I
L798_01684 Zootermopsis nevadensis L798_01684 I
LDEC013410 Leptinotarsa decemlineata LDEC013410 I
LotgiG168359 Lottia gigantea LotgiG168359 I
MCINX013640 Melitaea cinxia MCINX013640 I
Myotis_brandtii_DEAF1_10008461 Myotis brandtii Myotis_brandtii_DEAF1_10008461 I
NV18168 Nasonia vitripennis NV18168 I
Ocbimv22013386m.g Octopus bimaculoides Ocbimv22013386m.g I
Ogr05554 Ophisaurus gracilis Ogr05554 I
PHUM581340 Pediculus humanus PHUM581340 I
Pvit_08245 Pogona vitticeps Pvit_08245 I
Sakowv30032927m.g Saccoglossus kowalevskii Sakowv30032927m.g I
SINV20880 Solenopsis invicta SINV20880 I
SMAR003119 Strigamia maritima SMAR003119 I
TC000085 Tribolium castaneum TC000085 I
deaf1 Xenopus tropicalis XB-GENE-1216227 I
YQE_06816 Dendroctonus ponderosae YQE_06816 I