Pavir.Fa00493 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Fa00493 T050769_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.867 0.961
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.844 0.902
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.844 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa00493.1.p bHLH 315 365

Links

Other bHLH family TFs
Other Panicum virgatum TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL012404 Aedes aegypti AAEL012404 I
Aan_R004593 Calypte anna Aan_R004593 I
AARA010384 Anopheles arabiensis AARA010384 I
ACEP25215 Atta cephalotes ACEP25215 I
ACUA022925 Anopheles culicifacies ACUA022925 I
ACYPI008529 Acyrthosiphon pisum ACYPI008529 I
AEPI000655 Anopheles epiroticus AEPI000655 I
AFAF010157 Anopheles farauti AFAF010157 I
Afo_R006896 Aptenodytes forsteri Afo_R006896 I
AFUN011444 Anopheles funestus AFUN011444 I
AGAP000673 Anopheles gambiae AGAP000673 I
Alligator_sinensis_CCG008293.1 Alligator sinensis Alligator_sinensis_CCG008293.1 I
Alligator_sinensis_CCG014455.1 Alligator sinensis Alligator_sinensis_CCG014455.1 I
AMEC017534 Anopheles melas AMEC017534 I
AMEM002678 Anopheles merus AMEM002678 I
AMIN002038 Anopheles minimus AMIN002038 I
Aqu1.217456 Amphimedon queenslandica Aqu1.217456 I
ASTEI01151 Anopheles stephensi ASTEI01151 I
BGIBMGA006943 Bombyx mori BGIBMGA006943 I
Brh_R011836 Buceros rhinoceros Brh_R011836 I
CapteG224157 Capitella teleta CapteG224157 I
CapteG39149 Capitella teleta CapteG39149 I
CapteG39158 Capitella teleta CapteG39158 I
CGI_10004780 Crassostrea gigas CGI_10004780 I
CGI_10004781 Crassostrea gigas CGI_10004781 I
CGI_10007690 Crassostrea gigas CGI_10007690 I
CLEC009335 Cimex lectularius CLEC009335 I
Cmyd_10010806 Chelonia mydas Cmyd_10010806 I
Cmyd_10015831 Chelonia mydas Cmyd_10015831 I
csin109639 Clonorchis sinensis csin109639 I
D915_04632 Fasciola hepatica D915_04632 I
D917_07971 Trichinella nativa D917_07971 I
DAPPUDRAFT_106303 Daphnia pulex DAPPUDRAFT_106303 I
ECANG7_05597 Echinococcus canadensis ECANG7_05597 I
ECPE_0000838601 Echinostoma caproni ECPE_0000838601 I
EFV52612 Trichinella spiralis EFV52612 I
SP6 Anolis carolinensis ENSACAG00000006831 I
ENSAMEG00000000258 Ailuropoda melanoleuca ENSAMEG00000000258 I
ENSAMXG00000004709 Astyanax mexicanus ENSAMXG00000004709 I
ENSAMXG00000011277 Astyanax mexicanus ENSAMXG00000011277 I
ENSAMXG00000013057 Astyanax mexicanus ENSAMXG00000013057 I
ENSAMXG00000015246 Astyanax mexicanus ENSAMXG00000015246 I
ENSAMXG00000015260 Astyanax mexicanus ENSAMXG00000015260 I
ENSAMXG00000020011 Astyanax mexicanus ENSAMXG00000020011 I
SP8 Bos taurus ENSBTAG00000002604 I
SP9 Bos taurus ENSBTAG00000014949 I
SP3 Canis familiaris ENSCAFG00000013169 I
SP8 Callithrix jacchus ENSCJAG00000001245 I
SP3 Callithrix jacchus ENSCJAG00000007851 I
SP8 Cavia porcellus ENSCPOG00000026910 I
ENSCSAG00000013600 Chlorocebus sabaeus ENSCSAG00000013600 I
ENSCSAG00000014648 Chlorocebus sabaeus ENSCSAG00000014648 I
ENSCSAG00000014689 Chlorocebus sabaeus ENSCSAG00000014689 I
sp8a Danio rerio ENSDARG00000011870 I
sp8b Danio rerio ENSDARG00000056666 I
sp5a Danio rerio ENSDARG00000076571 I
sp9 Danio rerio ENSDARG00000099374 I
SP9 Dasypus novemcinctus ENSDNOG00000019150 I
ENSECAG00000002849 Equus caballus ENSECAG00000002849 I
SP3 Equus caballus ENSECAG00000013930 I
SP8 Erinaceus europaeus ENSEEUG00000000621 I
ENSFALG00000001963 Ficedula albicollis ENSFALG00000001963 I
ENSFALG00000002922 Ficedula albicollis ENSFALG00000002922 I
SP3 Felis catus ENSFCAG00000030033 I
SP8 Homo sapiens ENSG00000164651 D
SP3 Homo sapiens ENSG00000172845 D
SP9 Homo sapiens ENSG00000217236 D
SP9 Gasterosteus aculeatus ENSGACG00000004757 I
sp5a Gasterosteus aculeatus ENSGACG00000005058 I
SP8 Gasterosteus aculeatus ENSGACG00000006479 I
ENSGACG00000006667 Gasterosteus aculeatus ENSGACG00000006667 I
sp8b Gasterosteus aculeatus ENSGACG00000008062 I
zgc:77358 Gasterosteus aculeatus ENSGACG00000018154 N
ENSGALG00000009327 Gallus gallus ENSGALG00000009327 I
ENSGALG00000027511 Gallus gallus ENSGALG00000027511 I
SP9 Gorilla gorilla ENSGGOG00000007345 I
ENSGGOG00000011699 Gorilla gorilla ENSGGOG00000011699 I
ENSGMOG00000002497 Gadus morhua ENSGMOG00000002497 I
ENSGMOG00000004590 Gadus morhua ENSGMOG00000004590 I
ENSGMOG00000008078 Gadus morhua ENSGMOG00000008078 I
ENSGMOG00000017717 Gadus morhua ENSGMOG00000017717 I
ENSGMOG00000020473 Gadus morhua ENSGMOG00000020473 N
ENSLACG00000001435 Latimeria chalumnae ENSLACG00000001435 I
ENSLACG00000005288 Latimeria chalumnae ENSLACG00000005288 I
ENSLACG00000011942 Latimeria chalumnae ENSLACG00000011942 I
ENSLACG00000018513 Latimeria chalumnae ENSLACG00000018513 I
SP3 Loxodonta africana ENSLAFG00000013121 I
ENSLOCG00000007391 Lepisosteus oculatus ENSLOCG00000007391 I
ENSLOCG00000007856 Lepisosteus oculatus ENSLOCG00000007856 I
ENSLOCG00000011486 Lepisosteus oculatus ENSLOCG00000011486 I
ENSLOCG00000013714 Lepisosteus oculatus ENSLOCG00000013714 N
ENSMEUG00000012808 Macropus eugenii ENSMEUG00000012808 I
SP3 Meleagris gallopavo ENSMGAG00000009845 I
SP3 Myotis lucifugus ENSMLUG00000006791 I
SP8 Macaca mulatta ENSMMUG00000003722 I
SP3 Macaca mulatta ENSMMUG00000021818 I
SP9 Macaca mulatta ENSMMUG00000023005 I
SP8 Monodelphis domestica ENSMODG00000001375 I
SP3 Monodelphis domestica ENSMODG00000009184 I
SP9 Monodelphis domestica ENSMODG00000009303 I
ENSMPUG00000013903 Mustela putorius furo ENSMPUG00000013903 I
ENSMPUG00000013919 Mustela putorius furo ENSMPUG00000013919 I
Sp8 Mus musculus ENSMUSG00000048562 I
Sp9 Mus musculus ENSMUSG00000068859 I
ENSNLEG00000016729 Nomascus leucogenys ENSNLEG00000016729 I
ENSOARG00000000427 Ovis aries ENSOARG00000000427 I
SP3 Oryctolagus cuniculus ENSOCUG00000026678 I
SP9 Otolemur garnettii ENSOGAG00000034062 I
ENSONIG00000002896 Oreochromis niloticus ENSONIG00000002896 I
ENSONIG00000003253 Oreochromis niloticus ENSONIG00000003253 N
ENSONIG00000008657 Oreochromis niloticus ENSONIG00000008657 I
ENSONIG00000008768 Oreochromis niloticus ENSONIG00000008768 I
ENSONIG00000010871 Oreochromis niloticus ENSONIG00000010871 I
SP3 Ochotona princeps ENSOPRG00000005517 I
SP8 Oryzias latipes ENSORLG00000003978 I
sp8b Oryzias latipes ENSORLG00000007242 I
sp5a Oryzias latipes ENSORLG00000017252 I
SP9 Oryzias latipes ENSORLG00000017492 I
ENSORLG00000018574 Oryzias latipes ENSORLG00000018574 N
ENSP00000310301 Macaca fascicularis ENSP00000310301 I
ENSPANG00000005418 Papio anubis ENSPANG00000005418 I
ENSPANG00000016221 Papio anubis ENSPANG00000016221 I
ENSPANG00000023061 Papio anubis ENSPANG00000023061 I
SP3 Procavia capensis ENSPCAG00000002179 I
SP9 Procavia capensis ENSPCAG00000012721 I
ENSPFOG00000001566 Poecilia formosa ENSPFOG00000001566 I
ENSPFOG00000007998 Poecilia formosa ENSPFOG00000007998 I
ENSPFOG00000011175 Poecilia formosa ENSPFOG00000011175 I
ENSPFOG00000013459 Poecilia formosa ENSPFOG00000013459 I
ENSPFOG00000020694 Poecilia formosa ENSPFOG00000020694 N
ENSPPYG00000012941 Pongo abelii ENSPPYG00000012941 I
ENSPPYG00000017747 Pongo abelii ENSPPYG00000017747 I
SP3 Pan troglodytes ENSPTRG00000012647 I
SP8 Pan troglodytes ENSPTRG00000018968 I
SP8 Pteropus vampyrus ENSPVAG00000005109 I
Sp8 Rattus norvegicus ENSRNOG00000005943 I
Sp9 Rattus norvegicus ENSRNOG00000028187 I
SP3 Sorex araneus ENSSARG00000011358 I
ENSSHAG00000013923 Sarcophilus harrisii ENSSHAG00000013923 I
ENSSSCG00000029407 Sus scrofa ENSSSCG00000029407 I
ENSSTOG00000028058 Ictidomys tridecemlineatus ENSSTOG00000028058 I
SP3 Tupaia belangeri ENSTBEG00000011156 I
ENSTGUG00000002679 Taeniopygia guttata ENSTGUG00000002679 I
SP3 Taeniopygia guttata ENSTGUG00000008690 I
SP8 Tetraodon nigroviridis ENSTNIG00000002903 I
zgc:77358 Tetraodon nigroviridis ENSTNIG00000014142 N
sp5a Tetraodon nigroviridis ENSTNIG00000016928 I
sp3a Tetraodon nigroviridis ENSTNIG00000016947 I
SP9 Tetraodon nigroviridis ENSTNIG00000016949 I
sp8b Tetraodon nigroviridis ENSTNIG00000018442 I
ENSTRUG00000004645 Takifugu rubripes ENSTRUG00000004645 N
SP8 Takifugu rubripes ENSTRUG00000008153 I
sp8b Takifugu rubripes ENSTRUG00000015810 I
SP9 Takifugu rubripes ENSTRUG00000017609 I
sp3a Takifugu rubripes ENSTRUG00000017623 I
sp5a Takifugu rubripes ENSTRUG00000017816 I
ENSTSYG00000008651 Tarsius syrichta ENSTSYG00000008651 I
SP8 Tursiops truncatus ENSTTRG00000013387 I
ENSXMAG00000000590 Xiphophorus maculatus ENSXMAG00000000590 I
ENSXMAG00000004924 Xiphophorus maculatus ENSXMAG00000004924 I
ENSXMAG00000005380 Xiphophorus maculatus ENSXMAG00000005380 I
ENSXMAG00000018112 Xiphophorus maculatus ENSXMAG00000018112 N
estExt_fgenesh2_pg.C_1190037 Branchiostoma floridae estExt_fgenesh2_pg.C_1190037 I
estExt_fgenesh2_pg.C_1190051 Branchiostoma floridae estExt_fgenesh2_pg.C_1190051 I
Sp1 Drosophila melanogaster FBgn0020378 D
GA12282 Drosophila pseudoobscura FBgn0072328 I
GF22533 Drosophila ananassae FBgn0099527 I
GG18323 Drosophila erecta FBgn0110539 I
GH11802 Drosophila grimshawi FBgn0119282 I
GI15983 Drosophila mojavensis FBgn0138732 I
GL16372 Drosophila persimilis FBgn0153976 I
GM11386 Drosophila sechellia FBgn0166329 I
GK25356 Drosophila willistoni FBgn0227315 I
GE17808 Drosophila yakuba FBgn0235250 I
Gfo_R001364 Geospiza fortis Gfo_R001364 I
HelroG126349 Helobdella robusta HelroG126349 I
HelroG136356 Helobdella robusta HelroG136356 I
HelroG136424 Helobdella robusta HelroG136424 I
HHAL010843-PA Halyomorpha halys HHAL010843-PA I
HMEL005340 Heliconius melpomene HMEL005340 I
ISCW023685 Ixodes scapularis ISCW023685 I
KGM_00012 Danaus plexippus KGM_00012 I
L798_09167 Zootermopsis nevadensis L798_09167 I
LCUP010370 Lucilia cuprina LCUP010370 I
LDEC008343 Leptinotarsa decemlineata LDEC008343 I
LLOJ007007 Lutzomyia longipalpis LLOJ007007 I
LotgiG58417 Lottia gigantea LotgiG58417 I
LotgiG58476 Lottia gigantea LotgiG58476 I
MCINX013792 Melitaea cinxia MCINX013792 I
MESCA000017 Megaselia scalaris MESCA000017 I
Myotis_brandtii_Sp3_10034975 Myotis brandtii Myotis_brandtii_Sp3_10034975 I
NEMVEDRAFT_v1g99612 Nematostella vectensis NEMVEDRAFT_v1g99612 I
nRc.2.0.1.g47400 Romanomermis culicivorax nRc.2.0.1.g47400 I
NV12527 Nasonia vitripennis NV12527 I
NV20053 Nasonia vitripennis NV20053 I
Ocbimv22023102m.g Octopus bimaculoides Ocbimv22023102m.g I
Ocbimv22028510m.g Octopus bimaculoides Ocbimv22028510m.g I
Ocbimv22028516m.g Octopus bimaculoides Ocbimv22028516m.g I
Ogr12594 Ophisaurus gracilis Ogr12594 I
PHUM453610 Pediculus humanus PHUM453610 I
PPAI004544 Phlebotomus papatasi PPAI004544 I
PPAI008544 Phlebotomus papatasi PPAI008544 I
Pvit_11839 Pogona vitticeps Pvit_11839 I
Pvit_13957 Pogona vitticeps Pvit_13957 I
PXEA_0001679901 Protopolystoma xenopodis PXEA_0001679901 I
RPRC004788 Rhodnius prolixus RPRC004788 I
Sakowv30026942m.g Saccoglossus kowalevskii Sakowv30026942m.g I
Sakowv30026949m.g Saccoglossus kowalevskii Sakowv30026949m.g I
SINV13577 Solenopsis invicta SINV13577 I
Sjc_0080330 Schistosoma japonicum Sjc_0080330 I
SMAR004861 Strigamia maritima SMAR004861 I
SMAR004954 Strigamia maritima SMAR004954 I
Smp_066930 Schistosoma mansoni Smp_066930 I
SMU15040248 Schmidtea mediterranea SMU15040248 I
SPU_011280 Strongylocentrotus purpuratus SPU_011280 I
SPU_016114 Strongylocentrotus purpuratus SPU_016114 I
SPU_024189 Strongylocentrotus purpuratus SPU_024189 I
SROB_0001082301 Schistosoma rodhaini SROB_0001082301 I
SSLN_0000264201 Schistocephalus solidus SSLN_0000264201 I
T265_02933 Opisthorchis viverrini T265_02933 I
TASK_0000640901 Taenia asiatica TASK_0000640901 I
TC011697 Tribolium castaneum TC011697 I
tetur22g00570 Tetranychus urticae tetur22g00570 I
TriadG17488 Trichoplax adhaerens TriadG17488 I
TsM_000913800 Taenia solium TsM_000913800 I
TTAC_0000342701 Hydatigera taeniaeformis TTAC_0000342701 I
sp8.L Xenopus laevis XB-GENE-1216193 I
sp9 Xenopus tropicalis XB-GENE-5931012 I
XP_002933331 Xenopus tropicalis XP_002933331 I
XP_002933332 Xenopus tropicalis XP_002933332 I
XP_002933333 Xenopus tropicalis XP_002933333 I
YQE_04342 Dendroctonus ponderosae YQE_04342 I