Pavir.Ca00211 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Ca00211 T072342_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK27109.1
M01163_2.00 		Cannabis sativa
KACAGCTR
YAGCTGTM		 PBM
Lambert et al.(2019)
pTH10158 		0.841 0.935
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00211.1.p bZIP 121 182
Pavir.Ca00211.2.p bZIP 121 182

Links

Other bZIP family TFs
Other Panicum virgatum TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00030p00014690 Amborella trichopoda AMTR_s00030p00014690 I 0.841
Aquca_023_00109 Aquilegia coerulea Aquca_023_00109 I 0.841
BGIOSGA034853 Oryza indica BGIOSGA034853 N 0.787
BGIOSGA037037 Oryza indica BGIOSGA037037 I 0.855
BRADI4G24937 Brachypodium distachyon BRADI4G24937 I 0.844
BRADI4G41890 Brachypodium distachyon BRADI4G41890 I 0.855
Ciclev10001715m.g Citrus clementina Ciclev10001715m.g I 0.841
Cla014037 Citrullus lanatus Cla014037 I 0.826
Cla015261 Citrullus lanatus Cla015261 I 0.841
Cucsa.363640 Cucumis sativus Cucsa.363640 I 0.826
Eucgr.F02715 Eucalyptus grandis Eucgr.F02715 I 0.841
F775_08606 Aegilops tauschii F775_08606 I 0.806
Gorai.009G285000 Gossypium raimondii Gorai.009G285000 I 0.822
GRMZM2G079365 Zea mays GRMZM2G079365 I 0.855
GRMZM2G136266 Zea mays GRMZM2G136266 I 0.827
GRMZM2G146020 Zea mays GRMZM2G146020 I 0.829
GRMZM5G821024 Zea mays GRMZM5G821024 I 0.855
GSMUA_Achr3G19170_001 Musa acuminata GSMUA_Achr3G19170_001 I 0.792
GSMUA_Achr6G13040_001 Musa acuminata GSMUA_Achr6G13040_001 I 0.809
GSMUA_Achr6G18130_001 Musa acuminata GSMUA_Achr6G18130_001 I 0.795
LPERR11G03390 Leersia perrieri LPERR11G03390 I 0.855
LPERR12G03530 Leersia perrieri LPERR12G03530 I 0.855
Lus10029773.g Linum usitatissimum Lus10029773.g I 0.817
Lus10042802.g Linum usitatissimum Lus10042802.g I 0.817
mgf003343m Mimulus guttatus mgf003343m I 0.827
MLOC_71198 Hordeum vulgare MLOC_71198 I 0.855
OB11G13300 Oryza brachyantha OB11G13300 I 0.855
OB12G13750 Oryza brachyantha OB12G13750 I 0.855
OBART11G03920 Oryza barthii OBART11G03920 I 0.855
OBART12G03760 Oryza barthii OBART12G03760 I 0.855
OGLUM11G03630 Oryza glumaepatula OGLUM11G03630 N 0.788
OGLUM12G04480 Oryza glumaepatula OGLUM12G04480 I 0.855
OLONG_001598 Oryza longistaminata OLONG_001598 I 0.855
OMERI11G03570 Oryza meridionalis OMERI11G03570 N 0.788
OMERI12G02030 Oryza meridionalis OMERI12G02030 I 0.855
ONIVA11G04030 Oryza nivara ONIVA11G04030 I 0.855
ONIVA12G03450 Oryza nivara ONIVA12G03450 I 0.855
OPUNC11G03640 Oryza punctata OPUNC11G03640 N 0.788
orange1.1g019163m.g Citrus sinensis orange1.1g019163m.g I 0.841
ORGLA11G0036500 Oryza glaberrima ORGLA11G0036500 I 0.855
ORGLA12G0036800 Oryza glaberrima ORGLA12G0036800 I 0.855
ORUFI11G03840 Oryza rufipogon ORUFI11G03840 I 0.855
ORUFI12G04380 Oryza rufipogon ORUFI12G04380 I 0.855
OS11G0160500 Oryza sativa OS11G0160500 N 0.787
OS12G0162500 Oryza sativa OS12G0162500 I 0.855
Pavir.Cb01934 Panicum virgatum Pavir.Cb01934 N 0.788
Pavir.Ha01827 Panicum virgatum Pavir.Ha01827 I 0.855
Pavir.Hb01916 Panicum virgatum Pavir.Hb01916 I 0.855
PK27109.1 Cannabis sativa PK27109.1 D 0.841
POPTR_0005s21300 Populus trichocarpa POPTR_0005s21300 I 0.855
SapurV1A.0066s0110 Salix purpurea SapurV1A.0066s0110 I 0.841
SapurV1A.0256s0010 Salix purpurea SapurV1A.0256s0010 I 0.836
SapurV1A.1302s0050 Salix purpurea SapurV1A.1302s0050 I 0.836
Sb05g003810 Sorghum bicolor Sb05g003810 I 0.855
Sb08g003940 Sorghum bicolor Sb08g003940 I 0.855
Si010549m.g Setaria italica Si010549m.g I 0.855
Si026605m.g Setaria italica Si026605m.g I 0.855
Traes_4AL_273ACCFFD Triticum aestivum Traes_4AL_273ACCFFD I 0.855
Traes_4BS_ED206A2BB Triticum aestivum Traes_4BS_ED206A2BB I 0.855
Traes_4DS_FE97492F2 Triticum aestivum Traes_4DS_FE97492F2 I 0.855
Traes_5AL_538EC4C86 Triticum aestivum Traes_5AL_538EC4C86 I 0.806
Traes_5BL_4700CC358 Triticum aestivum Traes_5BL_4700CC358 N 0.786
Traes_5DL_841444545 Triticum aestivum Traes_5DL_841444545 I 0.855
TRIUR3_12877 Triticum urartu TRIUR3_12877 I 0.855
TRIUR3_31416 Triticum urartu TRIUR3_31416 I 0.855
VIP1 Vitis vinifera VIT_18s0076g00330 I 0.841