Pavir.Hb01807 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Hb01807 T072414_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TGA10
M06783_2.00 		Arabidopsis thaliana
NVTGACGTCAKCDNH
DNHGMTGACGTCABN		 Dap-seq
OMalley et al.(2016)
TGA10_col_a 		0.794 0.848
TGA10
M06784_2.00 		Arabidopsis thaliana
DRTGACGTCAKCDN
NHGMTGACGTCAYH		 Dap-seq
OMalley et al.(2016)
TGA10_colamp_a 		0.794 0.848
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Hb01807.1.p bZIP 171 219
Pavir.Hb01807.2.p bZIP 170 218
Pavir.Hb01807.3.p bZIP 170 218
Pavir.Hb01807.4.p bZIP 171 219

Links

Other bZIP family TFs
Other Panicum virgatum TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006200 Calypte anna Aan_R006200 I
Afo_R011293 Aptenodytes forsteri Afo_R011293 N
Cmyd_10007085 Chelonia mydas Cmyd_10007085 I
ENSAPLG00000003549 Anas platyrhynchos ENSAPLG00000003549 I
Mlx Gallus gallus ENSGALG00000003199 I
ENSPSIG00000015412 Pelodiscus sinensis ENSPSIG00000015412 I
MLX Taeniopygia guttata ENSTGUG00000002694 N
Gfo_R009040 Geospiza fortis Gfo_R009040 N
Ogr17012 Ophisaurus gracilis Ogr17012 I
Pvit_17633 Pogona vitticeps Pvit_17633 I