Pavir.Hb01807 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Hb01807 T072414_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TGA10
M06783_2.00 		Arabidopsis thaliana
NVTGACGTCAKCDNH
DNHGMTGACGTCABN		 Dap-seq
OMalley et al.(2016)
TGA10_col_a 		0.794 0.848
TGA10
M06784_2.00 		Arabidopsis thaliana
DRTGACGTCAKCDN
NHGMTGACGTCAYH		 Dap-seq
OMalley et al.(2016)
TGA10_colamp_a 		0.794 0.848
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Hb01807.1.p bZIP 171 219
Pavir.Hb01807.2.p bZIP 170 218
Pavir.Hb01807.3.p bZIP 170 218
Pavir.Hb01807.4.p bZIP 171 219

Links

Other bZIP family TFs
Other Panicum virgatum TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400011430 Solanum tuberosum PGSC0003DMG400011430 I 0.798
Solyc10g078670.1 Solanum lycopersicum Solyc10g078670.1 I 0.798
TGA10 Arabidopsis thaliana AT5G06839 D 0.794
BGIOSGA019942 Oryza indica BGIOSGA019942 I 0.794
Bo3g004060 Brassica oleracea Bo3g004060 I 0.794
Bo9g175780 Brassica oleracea Bo9g175780 I 0.794
TGA10 Arabidopsis lyrata fgenesh2_kg.6__632__AT5G06839.2 I 0.794
GLYMA03G29825 Glycine max GLYMA03G29825 I 0.794
GLYMA19G32715 Glycine max GLYMA19G32715 I 0.794
LPERR05G14450 Leersia perrieri LPERR05G14450 I 0.794
OB05G26080 Oryza brachyantha OB05G26080 I 0.794
OBART05G18270 Oryza barthii OBART05G18270 I 0.794
OGLUM05G19350 Oryza glumaepatula OGLUM05G19350 I 0.794
OLONG_005656 Oryza longistaminata OLONG_005656 I 0.794
OMERI05G15750 Oryza meridionalis OMERI05G15750 I 0.794
ONIVA05G19180 Oryza nivara ONIVA05G19180 I 0.794
ORGLA05G0158500 Oryza glaberrima ORGLA05G0158500 I 0.794
ORUFI05G19430 Oryza rufipogon ORUFI05G19430 I 0.794
OS05G0443900 Oryza sativa OS05G0443900 I 0.794
PGSC0003DMG400023678 Solanum tuberosum PGSC0003DMG400023678 I 0.794
Solyc10g080410.1 Solanum lycopersicum Solyc10g080410.1 I 0.794
Solyc11g068370.1 Solanum lycopersicum Solyc11g068370.1 I 0.794
Bostr.13129s0288 Boechera stricta Bostr.13129s0288 I 0.794
Cagra.8005s0020 Capsella grandiflora Cagra.8005s0020 I 0.794
Carubv10003744m.g Capsella rubella Carubv10003744m.g I 0.794
Eucgr.G02341 Eucalyptus grandis Eucgr.G02341 I 0.794
Eucgr.K01822 Eucalyptus grandis Eucgr.K01822 I 0.794
Thhalv10014032m.g Eutrema salsugineum Thhalv10014032m.g I 0.794
PDK_20s1736691g001 Phoenix dactylifera PDK_20s1736691g001 I 0.794
GSMUA_Achr11G14570_001 Musa acuminata GSMUA_Achr11G14570_001 I 0.791
Pavir.Ha01753 Panicum virgatum Pavir.Ha01753 N 0.785
GRMZM2G029979 Zea mays GRMZM2G029979 I 0.784