atf3 (Xenopus tropicalis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 XB-GENE-6085251 T073070_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Atf3
M00758_2.00 		Mus musculus
NNRTKAYNN
NNRTMAYNN		 PBM
Weirauch et al.(2013)
pTH2684 		0.911 0.903
Atf3
M01807_2.00 		Mus musculus
GATGACGY
RCGTCATC		 PBM
Weirauch et al.(2014)
pTH5018 		0.911 0.903
Atf3
M08825_2.00 		Mus musculus
VTGACTCAB
VTGAGTCAB		 Misc
Kulakovskiy et al.(2013)
ATF3_MOUSE.H11MO.0.A 		0.911 0.903
JDP2
M02836_2.00 		Homo sapiens
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
JDP2_1 		0.873 0.726
JDP2
M02837_2.00 		Homo sapiens
NRTGACGTCATB
VATGACGTCAYN		 SELEX
Jolma et al.(2013)
JDP2_2 		0.873 0.726
JDP2
M02838_2.00 		Homo sapiens
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
JDP2_3 		0.873 0.726
JDP2
M02839_2.00 		Homo sapiens
NRTGACGTCATN
NATGACGTCAYN		 SELEX
Jolma et al.(2013)
JDP2_4 		0.873 0.726
JDP2
M04285_2.00 		Homo sapiens
NATGASTCATV
BATGASTCATN		 SELEX
Yin et al.(2017)
JDP2_eDBD_HT-SELEX_1 		0.873 0.726
JDP2
M04286_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
JDP2_eDBD_HT-SELEX_2 		0.873 0.726
JDP2
M04289_2.00 		Homo sapiens
NRTGMSKCAYN
NRTGMSKCAYN		 SELEX
Yin et al.(2017)
JDP2_FL_HT-SELEX_1 		0.873 0.726
JDP2
M04290_2.00 		Homo sapiens
NRTKACRTMAYN
NRTKAYGTMAYN		 SELEX
Yin et al.(2017)
JDP2_FL_HT-SELEX_2 		0.873 0.726
JDP2
M04287_2.00 		Homo sapiens
BATGASTCAYN
NRTGASTCATV		 SELEX
Yin et al.(2017)
JDP2_eDBD_Methyl-HT-SELEX_1 		0.873 0.726
JDP2
M04288_2.00 		Homo sapiens
NRTGACRTCAYN
NRTGAYGTCAYN		 SELEX
Yin et al.(2017)
JDP2_eDBD_Methyl-HT-SELEX_2 		0.873 0.726
JDP2
M04291_2.00 		Homo sapiens
NRTGASTCAYN
NRTGASTCAYN		 SELEX
Yin et al.(2017)
JDP2_FL_Methyl-HT-SELEX_1 		0.873 0.726
JDP2
M04292_2.00 		Homo sapiens
NVTKACRTCAYN
NRTGAYGTMABN		 SELEX
Yin et al.(2017)
JDP2_FL_Methyl-HT-SELEX_2 		0.873 0.726
Jdp2
M00125_2.00 		Mus musculus
NRTGAYDNNN
NNNHRTCAYN		 PBM
Badis et al.(2009)
Jundm2_0911 		0.872 0.726
Jdp2
M01810_2.00 		Mus musculus
NNTGACGYMW
WKRCGTCANN		 PBM
Weirauch et al.(2014)
pTH5464 		0.872 0.726
Jdp2
M02861_2.00 		Mus musculus
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
Jdp2_1 		0.872 0.726
Jdp2
M02862_2.00 		Mus musculus
VATGACGTCAYN
NRTGACGTCATB		 SELEX
Jolma et al.(2013)
Jdp2_2 		0.872 0.726
Jdp2
M10033_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$JDP2_03 		0.872 0.726
ATF3
M04321_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF3_eDBD_HT-SELEX 		0.819 0.484
ATF3
M04323_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF3_FL_HT-SELEX 		0.819 0.484
ATF3
M04032_2.00 		Homo sapiens
RTGACGTCAK
MTGACGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
ATF3.1 		0.819 0.484
ATF3
M04033_2.00 		Homo sapiens
RTGACTCAY
RTGAGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
ATF3.2 		0.819 0.484
ATF3
M07822_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
GM12878_ATF3_HudsonAlpha 		0.819 0.484
ATF3
M07823_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_ATF3_HudsonAlpha 		0.819 0.484
ATF3
M07824_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_ATF3_HudsonAlpha 		0.819 0.484
ATF3
M07825_2.00 		Homo sapiens
VRTSACGTVR
YBACGTSAYB		 ChIP-seq
Gerstein et al.(2012)
K562_ATF3_Harvard 		0.819 0.484
ATF3
M08187_2.00 		Homo sapiens
GTCACGTG
CACGTGAC		 ChIP-seq
Contrino et al.(2012)
Mv41 		0.819 0.484
ATF3
M08188_2.00 		Homo sapiens
NRTGASTCAY
RTGASTCAYN		 ChIP-seq
Contrino et al.(2012)
Mv43 		0.819 0.484
ATF3
M08801_2.00 		Homo sapiens
RRTSACGTVRB
VYBACGTSAYY		 Misc
Kulakovskiy et al.(2013)
ATF3_HUMAN.H11MO.0.A 		0.819 0.484
ATF3
M09489_2.00 		Homo sapiens
NVTGASTCABNN
NNVTGASTCABN		 Misc
Heinz et al.(2010)
GBM-ATF3_GSE33912 		0.819 0.484
ATF3
M09977_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_02 		0.819 0.484
ATF3
M09978_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_05 		0.819 0.484
ATF3
M09979_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6_01 		0.819 0.484
ATF3
M09980_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6_02 		0.819 0.484
ATF3
M09981_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6 		0.819 0.484
ATF3
M04322_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
ATF3_eDBD_Methyl-HT-SELEX 		0.819 0.484
ATF3
M04324_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
ATF3_FL_Methyl-HT-SELEX 		0.819 0.484
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002934744 bZIP 84 145

Links

Other bZIP family TFs
Other Xenopus tropicalis TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001046 Ricinus communis 29738.m001046 I
anac044 Arabidopsis lyrata Al_scaffold_0003_51 N
anac085 Arabidopsis lyrata Al_scaffold_0006_1351 I
ANAC073 Arabidopsis lyrata Al_scaffold_0007_1273 I
SOG1 Arabidopsis thaliana AT1G25580 I
NAC010 Arabidopsis thaliana AT1G28470 D
anac044 Arabidopsis thaliana AT3G01600 N
NAC073 Arabidopsis thaliana AT4G28500 D
anac085 Arabidopsis thaliana AT5G14490 I
Bo1g017410 Brassica oleracea Bo1g017410 I
Bo5g055990 Brassica oleracea Bo5g055990 I
Bo7g113170 Brassica oleracea Bo7g113170 I
Bostr.12659s0396 Boechera stricta Bostr.12659s0396 I
Bostr.1460s0050 Boechera stricta Bostr.1460s0050 N
Bostr.2902s0186 Boechera stricta Bostr.2902s0186 I
Bostr.7867s0691 Boechera stricta Bostr.7867s0691 I
Bra001000 Brassica rapa Bra001000 N
Bra011034 Brassica rapa Bra011034 I
Bra024197 Brassica rapa Bra024197 I
Bra032910 Brassica rapa Bra032910 I
Cagra.11546s0003 Capsella grandiflora Cagra.11546s0003 I
Cagra.1225s0041 Capsella grandiflora Cagra.1225s0041 I
Cagra.1561s0026 Capsella grandiflora Cagra.1561s0026 N
Cagra.1822s0012 Capsella grandiflora Cagra.1822s0012 I
Cagra.3166s0054 Capsella grandiflora Cagra.3166s0054 I
Carubv10002665m.g Capsella rubella Carubv10002665m.g I
Carubv10005324m.g Capsella rubella Carubv10005324m.g I
Carubv10009087m.g Capsella rubella Carubv10009087m.g I
Carubv10009638m.g Capsella rubella Carubv10009638m.g I
Carubv10014004m.g Capsella rubella Carubv10014004m.g N
cassava12330.valid.m1 Manihot esculenta cassava12330.valid.m1 I
cassava14633.m1 Manihot esculenta cassava14633.m1 I
Ca_02457 Cicer arietinum Ca_02457 I
Ca_06348 Cicer arietinum Ca_06348 I
Ca_11273 Cicer arietinum Ca_11273 I
chr2.CM0749.410.nc Lotus japonicus chr2.CM0749.410.nc I
chr3.CM0160.860.nd Lotus japonicus chr3.CM0160.860.nd I
Ciclev10015507m.g Citrus clementina Ciclev10015507m.g I
Ciclev10031598m.g Citrus clementina Ciclev10031598m.g I
Cla004701 Citrullus lanatus Cla004701 I
Cla009808 Citrullus lanatus Cla009808 I
Cla020673 Citrullus lanatus Cla020673 I
Cucsa.011210 Cucumis sativus Cucsa.011210 I
Cucsa.126960 Cucumis sativus Cucsa.126960 I
Cucsa.283900 Cucumis sativus Cucsa.283900 I
Eucgr.E03226 Eucalyptus grandis Eucgr.E03226 I
Eucgr.J02254 Eucalyptus grandis Eucgr.J02254 I
gene03875-v1.0-hybrid Fragaria vesca gene03875-v1.0-hybrid I
gene29766-v1.0-hybrid Fragaria vesca gene29766-v1.0-hybrid I
GLYMA01G22510 Glycine max GLYMA01G22510 I
GLYMA02G11140 Glycine max GLYMA02G11140 I
GLYMA06G44250 Glycine max GLYMA06G44250 I
GLYMA07G32250 Glycine max GLYMA07G32250 I
GLYMA12G13710 Glycine max GLYMA12G13710 I
GLYMA12G33460 Glycine max GLYMA12G33460 I
GLYMA13G24320 Glycine max GLYMA13G24320 I
GLYMA13G36980 Glycine max GLYMA13G36980 I
GLYMA20G32690 Glycine max GLYMA20G32690 I
Gorai.006G034600 Gossypium raimondii Gorai.006G034600 I
Gorai.007G075300 Gossypium raimondii Gorai.007G075300 I
Gorai.008G186300 Gossypium raimondii Gorai.008G186300 I
Gorai.010G157600 Gossypium raimondii Gorai.010G157600 I
GSMUA_Achr3G07330_001 Musa acuminata GSMUA_Achr3G07330_001 I
GSMUA_Achr6G11230_001 Musa acuminata GSMUA_Achr6G11230_001 I
Lus10003668.g Linum usitatissimum Lus10003668.g N
Lus10021708.g Linum usitatissimum Lus10021708.g I
MDP0000276278 Malus domestica MDP0000276278 I
MDP0000309351 Malus domestica MDP0000309351 I
mgf012882m Mimulus guttatus mgf012882m I
MTR_1g093670 Medicago truncatula MTR_1g093670 I
MTR_1g093680 Medicago truncatula MTR_1g093680 I
MTR_2g090735 Medicago truncatula MTR_2g090735 I
MTR_4g078875 Medicago truncatula MTR_4g078875 I
MTR_4g088245 Medicago truncatula MTR_4g088245 I
MTR_5g053430 Medicago truncatula MTR_5g053430 I
MTR_7g033320 Medicago truncatula MTR_7g033320 I
MTR_8g069160 Medicago truncatula MTR_8g069160 I
orange1.1g014310m.g Citrus sinensis orange1.1g014310m.g I
Pavir.Aa00442 Panicum virgatum Pavir.Aa00442 I
Pavir.Da01643 Panicum virgatum Pavir.Da01643 I
Pavir.Db01100 Panicum virgatum Pavir.Db01100 I
PDK_20s1306131g001 Phoenix dactylifera PDK_20s1306131g001 I
PGSC0003DMG400000809 Solanum tuberosum PGSC0003DMG400000809 I
PGSC0003DMG400009381 Solanum tuberosum PGSC0003DMG400009381 I
PGSC0003DMG400031753 Solanum tuberosum PGSC0003DMG400031753 I
PK17141.1 Cannabis sativa PK17141.1 I
PK25812.1 Cannabis sativa PK25812.1 I
Pm010104 Prunus mume Pm010104 I
Pm029010 Prunus mume Pm029010 I
POPTR_0001s35490 Populus trichocarpa POPTR_0001s35490 I
POPTR_0008s11550 Populus trichocarpa POPTR_0008s11550 I
POPTR_0010s13980 Populus trichocarpa POPTR_0010s13980 I
PRUPE_ppa005648mg Prunus persica PRUPE_ppa005648mg I
PRUPE_ppa008828mg Prunus persica PRUPE_ppa008828mg I
SapurV1A.0079s0500 Salix purpurea SapurV1A.0079s0500 I
SapurV1A.0304s0050 Salix purpurea SapurV1A.0304s0050 I
SapurV1A.0716s0010 Salix purpurea SapurV1A.0716s0010 I
SapurV1A.1388s0020 Salix purpurea SapurV1A.1388s0020 I
SapurV1A.2846s0020 Salix purpurea SapurV1A.2846s0020 I
SOG1 Arabidopsis lyrata scaffold_102939.1 I
ANAC010 Arabidopsis lyrata scaffold_103183.1 I
Si006639m.g Setaria italica Si006639m.g I
Si019444m.g Setaria italica Si019444m.g I
Solyc02g077610.2 Solanum lycopersicum Solyc02g077610.2 I
Solyc07g053590.2 Solanum lycopersicum Solyc07g053590.2 I
TCM_011869 Theobroma cacao TCM_011869 I
TCM_016984 Theobroma cacao TCM_016984 I
TCM_029798 Theobroma cacao TCM_029798 I
Thhalv10007551m.g Eutrema salsugineum Thhalv10007551m.g I
Thhalv10008249m.g Eutrema salsugineum Thhalv10008249m.g I
Thhalv10015728m.g Eutrema salsugineum Thhalv10015728m.g N
Thhalv10022099m.g Eutrema salsugineum Thhalv10022099m.g N
Thhalv10025819m.g Eutrema salsugineum Thhalv10025819m.g I
Traes_5BL_3BA7EA9A3 Triticum aestivum Traes_5BL_3BA7EA9A3 I
Traes_7BS_99BF8BA2F Triticum aestivum Traes_7BS_99BF8BA2F I
Traes_7DS_78B5508C0 Triticum aestivum Traes_7DS_78B5508C0 I
SOG1 Vitis vinifera VIT_01s0011g02990 I
ANAC010 Vitis vinifera VIT_10s0003g00350 I
VIT_14s0066g00360 Vitis vinifera VIT_14s0066g00360 I