Bra020284 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra020284 T081932_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.794 0.913
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.777 0.848
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.771 0.739
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.771 0.739
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.762 0.739
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.761 0.739
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra020284.1-P C2H2 ZF 38 60
Bra020284.1-P C2H2 ZF 81 103

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28219.m000090 Ricinus communis 28219.m000090 I 0.000
Aquca_024_00080 Aquilegia coerulea Aquca_024_00080 I 0.000
NAC019 Arabidopsis thaliana AT1G52890 D 0.000
NAC055 Arabidopsis thaliana AT3G15500 D 0.000
RD26 Arabidopsis thaliana AT4G27410 I 0.000
Bo1g048300 Brassica oleracea Bo1g048300 I 0.000
Bo1g128450 Brassica oleracea Bo1g128450 I 0.000
Bo3g066850 Brassica oleracea Bo3g066850 I 0.000
Bo5g127040 Brassica oleracea Bo5g127040 I 0.000
Bo6g030940 Brassica oleracea Bo6g030940 I 0.000
Bo7g111390 Brassica oleracea Bo7g111390 I 0.000
Bostr.0124s0082 Boechera stricta Bostr.0124s0082 I 0.000
Bostr.28625s0149 Boechera stricta Bostr.28625s0149 I 0.000
Bostr.7867s0562 Boechera stricta Bostr.7867s0562 I 0.000
Bra001596 Brassica rapa Bra001596 I 0.000
Bra018998 Brassica rapa Bra018998 I 0.000
Bra019052 Brassica rapa Bra019052 I 0.000
Bra021113 Brassica rapa Bra021113 I 0.000
Bra026353 Brassica rapa Bra026353 I 0.000
Bra027238 Brassica rapa Bra027238 I 0.000
Cagra.0007s0097 Capsella grandiflora Cagra.0007s0097 I 0.000
Cagra.0570s0027 Capsella grandiflora Cagra.0570s0027 I 0.000
Cagra.0946s0025 Capsella grandiflora Cagra.0946s0025 I 0.000
Carubv10005353m.g Capsella rubella Carubv10005353m.g I 0.000
Carubv10009816m.g Capsella rubella Carubv10009816m.g I 0.000
Carubv10014211m.g Capsella rubella Carubv10014211m.g I 0.000
cassava2098.valid.m1 Manihot esculenta cassava2098.valid.m1 I 0.000
cassava42313.valid.m1 Manihot esculenta cassava42313.valid.m1 I 0.000
Ca_21186 Cicer arietinum Ca_21186 I 0.000
chr3.CM0590.390.nd Lotus japonicus chr3.CM0590.390.nd I 0.000
Ciclev10008812m.g Citrus clementina Ciclev10008812m.g I 0.000
Cla023770 Citrullus lanatus Cla023770 I 0.000
Cucsa.074610 Cucumis sativus Cucsa.074610 I 0.000
Cucsa.341800 Cucumis sativus Cucsa.341800 I 0.000
Eucgr.F01093 Eucalyptus grandis Eucgr.F01093 I 0.000
Eucgr.K01471 Eucalyptus grandis Eucgr.K01471 N 0.000
evm.TU.supercontig_80.93 Carica papaya evm.TU.supercontig_80.93 I 0.000
ANAC019 Arabidopsis lyrata fgenesh2_kg.1__4367__AT1G52890.1 I 0.000
ATNAC3 Arabidopsis lyrata fgenesh2_kg.3__1697__AT3G15500.1 I 0.000
RD26 Arabidopsis lyrata fgenesh2_kg.7__1491__AT4G27410.3 I 0.000
gene31149-v1.0-hybrid Fragaria vesca gene31149-v1.0-hybrid I 0.000
GLYMA06G38410 Glycine max GLYMA06G38410 I 0.000
GLYMA12G22880 Glycine max GLYMA12G22880 I 0.000
GLYMA12G35000 Glycine max GLYMA12G35000 I 0.000
GLYMA13G35550 Glycine max GLYMA13G35550 I 0.000
Gorai.002G073700 Gossypium raimondii Gorai.002G073700 I 0.000
Gorai.009G433200 Gossypium raimondii Gorai.009G433200 I 0.000
LjSGA_036303.1 Lotus japonicus LjSGA_036303.1 I 0.000
MDP0000132623 Malus domestica MDP0000132623 I 0.000
MDP0000262032 Malus domestica MDP0000262032 I 0.000
mgf001766m Mimulus guttatus mgf001766m I 0.000
MTR_2g079990 Medicago truncatula MTR_2g079990 I 0.000
MTR_8g059170 Medicago truncatula MTR_8g059170 I 0.000
orange1.1g019011m.g Citrus sinensis orange1.1g019011m.g I 0.000
PGSC0003DMG400015342 Solanum tuberosum PGSC0003DMG400015342 I 0.000
PGSC0003DMG400019294 Solanum tuberosum PGSC0003DMG400019294 I 0.000
PK20135.1 Cannabis sativa PK20135.1 I 0.000
Pm011603 Prunus mume Pm011603 I 0.000
POPTR_0001s41460 Populus trichocarpa POPTR_0001s41460 I 0.000
POPTR_0011s12400 Populus trichocarpa POPTR_0011s12400 I 0.000
POPTR_1659s00200 Populus trichocarpa POPTR_1659s00200 I 0.000
PRUPE_ppa008301mg Prunus persica PRUPE_ppa008301mg I 0.000
SapurV1A.0127s0020 Salix purpurea SapurV1A.0127s0020 I 0.000
SapurV1A.0864s0080 Salix purpurea SapurV1A.0864s0080 I 0.000
SapurV1A.1471s0010 Salix purpurea SapurV1A.1471s0010 I 0.000
Solyc07g063410.2 Solanum lycopersicum Solyc07g063410.2 I 0.000
Solyc12g013620.1 Solanum lycopersicum Solyc12g013620.1 I 0.000
TCM_031364 Theobroma cacao TCM_031364 I 0.000
Thhalv10011676m.g Eutrema salsugineum Thhalv10011676m.g I 0.000
Thhalv10021174m.g Eutrema salsugineum Thhalv10021174m.g I 0.000
Thhalv10025818m.g Eutrema salsugineum Thhalv10025818m.g I 0.000
VIT_06s0004g03080 Vitis vinifera VIT_06s0004g03080 I 0.000
VIT_19s0014g03290 Vitis vinifera VIT_19s0014g03290 I 0.000