Bra020284 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra020284 T081932_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.794 0.913
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.777 0.848
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.771 0.739
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.771 0.739
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.762 0.739
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.761 0.739
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra020284.1-P C2H2 ZF 38 60
Bra020284.1-P C2H2 ZF 81 103

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g025350 Brassica oleracea Bo2g025350 I 0.827
Bo3g017740 Brassica oleracea Bo3g017740 I 0.818
Bo9g140820 Brassica oleracea Bo9g140820 I 0.818
Bra006691 Brassica rapa Bra006691 I 0.818
Bra006692 Brassica rapa Bra006692 I 0.818
Bostr.26833s0254 Boechera stricta Bostr.26833s0254 I 0.818
Cagra.1317s0034 Capsella grandiflora Cagra.1317s0034 I 0.818
Thhalv10014884m.g Eutrema salsugineum Thhalv10014884m.g I 0.818
MTR_2g096540 Medicago truncatula MTR_2g096540 I 0.801
GLYMA13G40860 Glycine max GLYMA13G40860 I 0.800
GLYMA15G04570 Glycine max GLYMA15G04570 I 0.800
ZAT8 Arabidopsis thaliana AT3G46080 I 0.794
ZAT7 Arabidopsis thaliana AT3G46090 D 0.794
fgenesh2_kg.5__981__AT3G46090.1 Arabidopsis lyrata fgenesh2_kg.5__981__AT3G46090.1 I 0.794
Cagra.7309s0001 Capsella grandiflora Cagra.7309s0001 I 0.794
Carubv10018142m.g Capsella rubella Carubv10018142m.g I 0.794
Eucgr.B02396 Eucalyptus grandis Eucgr.B02396 I 0.790
Pm000815 Prunus mume Pm000815 I 0.785
Eucgr.B02394 Eucalyptus grandis Eucgr.B02394 I 0.785
evm.TU.supercontig_190.30 Carica papaya evm.TU.supercontig_190.30 I 0.785
PK27255.1 Cannabis sativa PK27255.1 I 0.785
PRUPE_ppa012242mg Prunus persica PRUPE_ppa012242mg I 0.779
Thhalv10002839m.g Eutrema salsugineum Thhalv10002839m.g I 0.779
Bo1g067420 Brassica oleracea Bo1g067420 I 0.778
Bra019477 Brassica rapa Bra019477 I 0.778
Cagra.7309s0002 Capsella grandiflora Cagra.7309s0002 I 0.778
Carubv10018774m.g Capsella rubella Carubv10018774m.g I 0.778
AT2G28710 Arabidopsis thaliana AT2G28710 I 0.777
AT3G46070 Arabidopsis thaliana AT3G46070 D 0.777
Bo4g069230 Brassica oleracea Bo4g069230 I 0.777
Bo4g166690 Brassica oleracea Bo4g166690 I 0.777
Bra011931 Brassica rapa Bra011931 I 0.777
Bra035678 Brassica rapa Bra035678 I 0.777
scaffold_401325.1 Arabidopsis lyrata scaffold_401325.1 I 0.777
Bostr.27991s0045 Boechera stricta Bostr.27991s0045 I 0.777
Cagra.8274s0001 Capsella grandiflora Cagra.8274s0001 I 0.777
Carubv10024179m.g Capsella rubella Carubv10024179m.g I 0.777
Thhalv10017375m.g Eutrema salsugineum Thhalv10017375m.g I 0.777
GLYMA11G15140 Glycine max GLYMA11G15140 I 0.776
GSMUA_Achr1G06720_001 Musa acuminata GSMUA_Achr1G06720_001 I 0.776
scaffold_501490.1 Arabidopsis lyrata scaffold_501490.1 I 0.776
chr3.LjT39G24.10.nd Lotus japonicus chr3.LjT39G24.10.nd I 0.776
MTR_7g100100 Medicago truncatula MTR_7g100100 I 0.772
cassava8924.m1 Manihot esculenta cassava8924.m1 I 0.772
Eucgr.B02391 Eucalyptus grandis Eucgr.B02391 I 0.772
Eucgr.B02392 Eucalyptus grandis Eucgr.B02392 I 0.772
Gorai.013G265200 Gossypium raimondii Gorai.013G265200 I 0.772
AT3G53600 Arabidopsis thaliana AT3G53600 D 0.771
Bo00576s170 Brassica oleracea Bo00576s170 I 0.771
Bra003148 Brassica rapa Bra003148 I 0.771
fgenesh2_kg.5__1736__AT3G53600.1 Arabidopsis lyrata fgenesh2_kg.5__1736__AT3G53600.1 I 0.771
GLYMA03G33060 Glycine max GLYMA03G33060 I 0.771
GLYMA03G33070 Glycine max GLYMA03G33070 I 0.771
GLYMA10G05210 Glycine max GLYMA10G05210 I 0.771
GLYMA13G19570 Glycine max GLYMA13G19570 I 0.771
GLYMA19G35770 Glycine max GLYMA19G35770 I 0.771
TCM_022001 Theobroma cacao TCM_022001 I 0.771
Bostr.11793s0034 Boechera stricta Bostr.11793s0034 I 0.771
Cagra.0612s0086 Capsella grandiflora Cagra.0612s0086 I 0.771
Carubv10018114m.g Capsella rubella Carubv10018114m.g I 0.771
Bostr.18473s0333 Boechera stricta Bostr.18473s0333 I 0.770
gene13962-v1.0-hybrid Fragaria vesca gene13962-v1.0-hybrid I 0.767
gene28452-v1.0-hybrid Fragaria vesca gene28452-v1.0-hybrid I 0.767
Cla008415 Citrullus lanatus Cla008415 I 0.766
Cucsa.213470 Cucumis sativus Cucsa.213470 I 0.766
Eucgr.L02150 Eucalyptus grandis Eucgr.L02150 I 0.766
gene13960-v1.0-hybrid Fragaria vesca gene13960-v1.0-hybrid I 0.766
MDP0000170739 Malus domestica MDP0000170739 I 0.766
MDP0000224773 Malus domestica MDP0000224773 I 0.766
MDP0000595671 Malus domestica MDP0000595671 I 0.766
MDP0000606526 Malus domestica MDP0000606526 I 0.766
Bo6g067580 Brassica oleracea Bo6g067580 I 0.765
PGSC0003DMG400030311 Solanum tuberosum PGSC0003DMG400030311 I 0.765
Eucgr.A01230 Eucalyptus grandis Eucgr.A01230 I 0.765
Thhalv10010956m.g Eutrema salsugineum Thhalv10010956m.g I 0.765
LjT09F05.130.nd Lotus japonicus LjT09F05.130.nd I 0.765
AC206217.2_FG006 Zea mays AC206217.2_FG006 I 0.764
Sb09g022660 Sorghum bicolor Sb09g022660 I 0.764
TCM_041899 Theobroma cacao TCM_041899 I 0.764
OMERI05G16850 Oryza meridionalis OMERI05G16850 I 0.763
OPUNC05G16930 Oryza punctata OPUNC05G16930 I 0.763
OPUNC05G16960 Oryza punctata OPUNC05G16960 I 0.763
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.763
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.763
PRUPE_ppa022066mg Prunus persica PRUPE_ppa022066mg I 0.763
Pm002762 Prunus mume Pm002762 I 0.763
28637.m000203 Ricinus communis 28637.m000203 I 0.763
cassava35212.m1 Manihot esculenta cassava35212.m1 I 0.763
Ciclev10013311m.g Citrus clementina Ciclev10013311m.g I 0.763
Eucgr.B02390 Eucalyptus grandis Eucgr.B02390 I 0.763
Gorai.006G176000 Gossypium raimondii Gorai.006G176000 I 0.763
MDP0000237150 Malus domestica MDP0000237150 I 0.763
orange1.1g031966m.g Citrus sinensis orange1.1g031966m.g I 0.763
ZAT11 Arabidopsis thaliana AT2G37430 I 0.762
AT5G03510 Arabidopsis thaliana AT5G03510 D 0.762
Bo4g030570 Brassica oleracea Bo4g030570 I 0.762
Bo4g186920 Brassica oleracea Bo4g186920 I 0.762
Bra005197 Brassica rapa Bra005197 I 0.762
Bra017188 Brassica rapa Bra017188 I 0.762
GSMUA_AchrUn_randomG07580_001 Musa acuminata GSMUA_AchrUn_randomG07580_001 I 0.762
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.762
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.762
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.762
POPTR_0001s24250 Populus trichocarpa POPTR_0001s24250 I 0.762
POPTR_0009s03280 Populus trichocarpa POPTR_0009s03280 I 0.762
POPTR_1833s00200 Populus trichocarpa POPTR_1833s00200 I 0.762
Cla013490 Citrullus lanatus Cla013490 I 0.762
Cucsa.379890 Cucumis sativus Cucsa.379890 I 0.762
Cagra.0666s0001 Capsella grandiflora Cagra.0666s0001 I 0.762
Carubv10024141m.g Capsella rubella Carubv10024141m.g I 0.762
Ciclev10029464m.g Citrus clementina Ciclev10029464m.g I 0.762
Gorai.003G136200 Gossypium raimondii Gorai.003G136200 I 0.762
Lus10024428.g Linum usitatissimum Lus10024428.g I 0.762
orange1.1g031430m.g Citrus sinensis orange1.1g031430m.g I 0.762
SapurV1A.0008s0970 Salix purpurea SapurV1A.0008s0970 I 0.762
AT5G04390 Arabidopsis thaliana AT5G04390 D 0.761
BGIOSGA010987 Oryza indica BGIOSGA010987 I 0.761
BGIOSGA018935 Oryza indica BGIOSGA018935 I 0.761
Bra039806 Brassica rapa Bra039806 I 0.761
F775_52535 Aegilops tauschii F775_52535 I 0.761
fgenesh2_kg.4__1796__AT2G37430.1 Arabidopsis lyrata fgenesh2_kg.4__1796__AT2G37430.1 I 0.761
GLYMA02G10490 Glycine max GLYMA02G10490 I 0.761
GLYMA03G33050 Glycine max GLYMA03G33050 I 0.761
GLYMA10G05190 Glycine max GLYMA10G05190 I 0.761
GLYMA10G43630 Glycine max GLYMA10G43630 I 0.761
GLYMA18G52410 Glycine max GLYMA18G52410 I 0.761
GLYMA19G35740 Glycine max GLYMA19G35740 I 0.761
GLYMA20G23180 Glycine max GLYMA20G23180 I 0.761
GRMZM2G048154 Zea mays GRMZM2G048154 I 0.761
GRMZM2G112251 Zea mays GRMZM2G112251 I 0.761
GSMUA_Achr10G03700_001 Musa acuminata GSMUA_Achr10G03700_001 I 0.761
GSMUA_Achr10G13540_001 Musa acuminata GSMUA_Achr10G13540_001 I 0.761
GSMUA_Achr6G15360_001 Musa acuminata GSMUA_Achr6G15360_001 I 0.761
GSMUA_Achr9G03210_001 Musa acuminata GSMUA_Achr9G03210_001 I 0.761
LPERR03G11200 Leersia perrieri LPERR03G11200 I 0.761
LPERR05G01000 Leersia perrieri LPERR05G01000 I 0.761
MTR_1g067640 Medicago truncatula MTR_1g067640 I 0.761
MTR_1g067650 Medicago truncatula MTR_1g067650 I 0.761
MTR_7g023560 Medicago truncatula MTR_7g023560 I 0.761
OBART05G01050 Oryza barthii OBART05G01050 I 0.761
OGLUM03G12700 Oryza glumaepatula OGLUM03G12700 I 0.761
OGLUM05G01060 Oryza glumaepatula OGLUM05G01060 I 0.761
OMERI03G11850 Oryza meridionalis OMERI03G11850 I 0.761
OMERI05G01120 Oryza meridionalis OMERI05G01120 I 0.761
ONIVA01G18540 Oryza nivara ONIVA01G18540 I 0.761
ONIVA05G01090 Oryza nivara ONIVA05G01090 I 0.761
OPUNC03G12220 Oryza punctata OPUNC03G12220 I 0.761
OPUNC05G00940 Oryza punctata OPUNC05G00940 I 0.761
ORGLA03G0122200 Oryza glaberrima ORGLA03G0122200 I 0.761
ORGLA05G0010800 Oryza glaberrima ORGLA05G0010800 I 0.761
ORUFI03G13310 Oryza rufipogon ORUFI03G13310 I 0.761
ORUFI05G01070 Oryza rufipogon ORUFI05G01070 I 0.761
OS03G0279700 Oryza sativa OS03G0279700 I 0.761
OS05G0114400 Oryza sativa OS05G0114400 I 0.761
PGSC0003DMG400023518 Solanum tuberosum PGSC0003DMG400023518 I 0.761
PGSC0003DMG400023547 Solanum tuberosum PGSC0003DMG400023547 I 0.761
POPTR_0006s12340 Populus trichocarpa POPTR_0006s12340 I 0.761
POPTR_0008s05110 Populus trichocarpa POPTR_0008s05110 I 0.761
POPTR_0010s21650 Populus trichocarpa POPTR_0010s21650 I 0.761
PRUPE_ppa011762mg Prunus persica PRUPE_ppa011762mg I 0.761
Sb09g001560 Sorghum bicolor Sb09g001560 I 0.761
Si023353m.g Setaria italica Si023353m.g I 0.761
Si037660m.g Setaria italica Si037660m.g I 0.761
Solyc05g054650.1 Solanum lycopersicum Solyc05g054650.1 I 0.761
Solyc05g054660.1 Solanum lycopersicum Solyc05g054660.1 I 0.761
Traes_1AS_B282BFB83 Triticum aestivum Traes_1AS_B282BFB83 I 0.761
Traes_1BS_22E395F75 Triticum aestivum Traes_1BS_22E395F75 I 0.761
Traes_1DS_CE96E8BF0 Triticum aestivum Traes_1DS_CE96E8BF0 I 0.761
Traes_4AS_D4763E468 Triticum aestivum Traes_4AS_D4763E468 I 0.761
VIT_06s0004g04180 Vitis vinifera VIT_06s0004g04180 I 0.761
VIT_13s0019g00480 Vitis vinifera VIT_13s0019g00480 I 0.761
Cla004091 Citrullus lanatus Cla004091 I 0.761
Pm018761 Prunus mume Pm018761 I 0.761
29154.m000218 Ricinus communis 29154.m000218 I 0.761
29585.m000611 Ricinus communis 29585.m000611 I 0.761
cassava15802.m1 Manihot esculenta cassava15802.m1 I 0.761
cassava16287.m1 Manihot esculenta cassava16287.m1 I 0.761
cassava42054.valid.m1 Manihot esculenta cassava42054.valid.m1 I 0.761
cassava9455.m1 Manihot esculenta cassava9455.m1 I 0.761
Cucsa.165460 Cucumis sativus Cucsa.165460 I 0.761
mgf023249m Mimulus guttatus mgf023249m I 0.761
Aquca_010_00704 Aquilegia coerulea Aquca_010_00704 I 0.761
Aquca_027_00274 Aquilegia coerulea Aquca_027_00274 I 0.761
Bostr.23794s0343 Boechera stricta Bostr.23794s0343 I 0.761
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.761
Eucgr.A01233 Eucalyptus grandis Eucgr.A01233 I 0.761
Eucgr.B02395 Eucalyptus grandis Eucgr.B02395 I 0.761
Eucgr.B02397 Eucalyptus grandis Eucgr.B02397 I 0.761
Eucgr.B02399 Eucalyptus grandis Eucgr.B02399 I 0.761
Eucgr.G02910 Eucalyptus grandis Eucgr.G02910 I 0.761
evm.TU.contig_30912.1 Carica papaya evm.TU.contig_30912.1 I 0.761
evm.TU.supercontig_163.32 Carica papaya evm.TU.supercontig_163.32 I 0.761
gene13959-v1.0-hybrid Fragaria vesca gene13959-v1.0-hybrid I 0.761
gene18204-v1.0-hybrid Fragaria vesca gene18204-v1.0-hybrid I 0.761
gene18205-v1.0-hybrid Fragaria vesca gene18205-v1.0-hybrid I 0.761
gene26659-v1.0-hybrid Fragaria vesca gene26659-v1.0-hybrid I 0.761
Gorai.006G104800 Gossypium raimondii Gorai.006G104800 I 0.761
Gorai.006G176100 Gossypium raimondii Gorai.006G176100 I 0.761
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.761
Gorai.011G254200 Gossypium raimondii Gorai.011G254200 I 0.761
Gorai.011G254300 Gossypium raimondii Gorai.011G254300 I 0.761
Gorai.012G006900 Gossypium raimondii Gorai.012G006900 I 0.761
Gorai.013G023300 Gossypium raimondii Gorai.013G023300 I 0.761
Lus10030330.g Linum usitatissimum Lus10030330.g I 0.761
MDP0000137826 Malus domestica MDP0000137826 I 0.761
MDP0000257423 Malus domestica MDP0000257423 I 0.761
Pavir.Ca00650 Panicum virgatum Pavir.Ca00650 I 0.761
Pavir.Ia03651 Panicum virgatum Pavir.Ia03651 I 0.761
Pavir.Ib01297 Panicum virgatum Pavir.Ib01297 I 0.761
SapurV1A.0038s0750 Salix purpurea SapurV1A.0038s0750 I 0.761
SapurV1A.0040s0050 Salix purpurea SapurV1A.0040s0050 I 0.761
SapurV1A.0095s0590 Salix purpurea SapurV1A.0095s0590 I 0.761
SapurV1A.4260s0020 Salix purpurea SapurV1A.4260s0020 I 0.761
Thhalv10017303m.g Eutrema salsugineum Thhalv10017303m.g I 0.761
chr5.CM0180.20.nc Lotus japonicus chr5.CM0180.20.nc I 0.761
LjSGA_020980.2 Lotus japonicus LjSGA_020980.2 I 0.761
OPUNC03G12210 Oryza punctata OPUNC03G12210 I 0.759
AC205250.3_FG004 Zea mays AC205250.3_FG004 I 0.758
BGIOSGA000523 Oryza indica BGIOSGA000523 I 0.758
GRMZM5G804618 Zea mays GRMZM5G804618 I 0.758
LPERR01G31460 Leersia perrieri LPERR01G31460 I 0.758
OGLUM01G40470 Oryza glumaepatula OGLUM01G40470 I 0.758
OMERI01G33680 Oryza meridionalis OMERI01G33680 I 0.758
ONIVA01G41600 Oryza nivara ONIVA01G41600 I 0.758
ORGLA01G0304300 Oryza glaberrima ORGLA01G0304300 I 0.758
ORUFI01G40000 Oryza rufipogon ORUFI01G40000 I 0.758
OS01G0838600 Oryza sativa OS01G0838600 I 0.758
TRAES3BF117500110CFD_g Triticum aestivum TRAES3BF117500110CFD_g I 0.758
Pavir.Ea03334 Panicum virgatum Pavir.Ea03334 I 0.758
Pavir.J32634 Panicum virgatum Pavir.J32634 I 0.758
GSMUA_Achr1G01260_001 Musa acuminata GSMUA_Achr1G01260_001 I 0.757
GSMUA_Achr5G29140_001 Musa acuminata GSMUA_Achr5G29140_001 I 0.757
Bo4g104940 Brassica oleracea Bo4g104940 I 0.756
Bo6g077190 Brassica oleracea Bo6g077190 I 0.756
Bo8g095300 Brassica oleracea Bo8g095300 I 0.756
Bra003422 Brassica rapa Bra003422 I 0.756
Bra007545 Brassica rapa Bra007545 I 0.756
Bra014483 Brassica rapa Bra014483 I 0.756
GLYMA10G05180 Glycine max GLYMA10G05180 I 0.756
GLYMA13G19550 Glycine max GLYMA13G19550 I 0.756
GRMZM2G061897 Zea mays GRMZM2G061897 I 0.756
MTR_1g067660 Medicago truncatula MTR_1g067660 I 0.756
PGSC0003DMG400008327 Solanum tuberosum PGSC0003DMG400008327 I 0.756
PGSC0003DMG400039582 Solanum tuberosum PGSC0003DMG400039582 I 0.756
Ca_07663 Cicer arietinum Ca_07663 I 0.756
Aquca_010_00703 Aquilegia coerulea Aquca_010_00703 I 0.756
Pavir.Ia00294 Panicum virgatum Pavir.Ia00294 I 0.756
Pavir.Ib04509 Panicum virgatum Pavir.Ib04509 I 0.756
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.756