ENSAPLG00000011730 (Anas platyrhynchos)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSAPLG00000011730 T087613_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.797 0.858
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.797 0.858
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.797 0.858
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.797 0.858
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.792 0.885
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.792 0.885
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.792 0.885
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.792 0.885
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.784 0.885
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.784 0.885
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.784 0.885
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.783 0.832
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.783 0.832
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.783 0.832
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAPLP00000011472 C2H2 ZF 2 24
ENSAPLP00000011472 C2H2 ZF 34 55
ENSAPLP00000011472 C2H2 ZF 59 81
ENSAPLP00000011472 C2H2 ZF 87 109
ENSAPLP00000011472 C2H2 ZF 115 136

Links

Other C2H2 ZF family TFs
Other Anas platyrhynchos TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA008381 Oryza indica BGIOSGA008381 N 0.000
F775_27241 Aegilops tauschii F775_27241 N 0.000
GRMZM2G134439 Zea mays GRMZM2G134439 N 0.000
GRMZM2G326783 Zea mays GRMZM2G326783 N 0.000
LPERR02G15710 Leersia perrieri LPERR02G15710 N 0.000
MLOC_62598 Hordeum vulgare MLOC_62598 N 0.000
OB02G27300 Oryza brachyantha OB02G27300 N 0.000
OBART02G19580 Oryza barthii OBART02G19580 N 0.000
OGLUM02G19870 Oryza glumaepatula OGLUM02G19870 N 0.000
OLONG_005200 Oryza longistaminata OLONG_005200 N 0.000
OMERI02G19460 Oryza meridionalis OMERI02G19460 N 0.000
ONIVA03G19920 Oryza nivara ONIVA03G19920 N 0.000
OPUNC02G17490 Oryza punctata OPUNC02G17490 N 0.000
ORGLA02G0167800 Oryza glaberrima ORGLA02G0167800 N 0.000
ORUFI02G20630 Oryza rufipogon ORUFI02G20630 N 0.000
OS02G0539600 Oryza sativa OS02G0539600 N 0.000
Pavir.Ab01874 Panicum virgatum Pavir.Ab01874 N 0.000
Pavir.J05591 Panicum virgatum Pavir.J05591 N 0.000
Sb04g005902 Sorghum bicolor Sb04g005902 N 0.000
Si016284m.g Setaria italica Si016284m.g N 0.000
Traes_6AS_0D7F17F06 Triticum aestivum Traes_6AS_0D7F17F06 N 0.000
Traes_6BL_1392D6149 Triticum aestivum Traes_6BL_1392D6149 N 0.000
Traes_6DL_88259C187 Triticum aestivum Traes_6DL_88259C187 N 0.000
TRIUR3_27498 Triticum urartu TRIUR3_27498 N 0.000