PRDM4 (Choloepus hoffmanni)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCHOG00000001744 T088746_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.823 0.985
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.823 0.985
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.823 0.985
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.823 0.985
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000001546 C2H2 ZF 510 532
ENSCHOP00000001546 C2H2 ZF 538 560
ENSCHOP00000001546 C2H2 ZF 566 588
ENSCHOP00000001546 C2H2 ZF 594 616
ENSCHOP00000001546 C2H2 ZF 622 644
ENSCHOP00000001546 C2H2 ZF 650 671

Links

Other C2H2 ZF family TFs
Other Choloepus hoffmanni TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008654 Calypte anna Aan_R008654 I 0.817
Afo_R011067 Aptenodytes forsteri Afo_R011067 I 0.817
Alligator_sinensis_CCG012513.1 Alligator sinensis Alligator_sinensis_CCG012513.1 I 0.817
Brh_R007685 Buceros rhinoceros Brh_R007685 I 0.817
Cmyd_10007196 Chelonia mydas Cmyd_10007196 I 0.815
PRDM4 Anolis carolinensis ENSACAG00000014907 I 0.809
ENSAMEG00000016174 Ailuropoda melanoleuca ENSAMEG00000016174 I 0.823
ENSAPLG00000009846 Anas platyrhynchos ENSAPLG00000009846 I 0.817
PRDM4 Bos taurus ENSBTAG00000012999 I 0.823
PRDM4 Canis familiaris ENSCAFG00000001788 I 0.823
PRDM4 Callithrix jacchus ENSCJAG00000015261 I 0.823
ENSCPOG00000022385 Cavia porcellus ENSCPOG00000022385 I 0.820
ENSCSAG00000002896 Chlorocebus sabaeus ENSCSAG00000002896 I 0.823
PRDM4 Dasypus novemcinctus ENSDNOG00000032478 I 0.823
PRDM4 Equus caballus ENSECAG00000015423 I 0.823
PRDM4 Erinaceus europaeus ENSEEUG00000006569 I 0.782
ENSFALG00000013342 Ficedula albicollis ENSFALG00000013342 I 0.817
PRDM4 Felis catus ENSFCAG00000022478 I 0.823
PRDM4 Homo sapiens ENSG00000110851 D 0.823
PRDM4 Gallus gallus ENSGALG00000012619 I 0.817
PRDM4 Gorilla gorilla ENSGGOG00000001244 I 0.823
PRDM4 Loxodonta africana ENSLAFG00000001483 I 0.823
ENSMEUG00000004495 Macropus eugenii ENSMEUG00000004495 I 0.817
PRDM4 Meleagris gallopavo ENSMGAG00000012815 I 0.817
PRDM4 Microcebus murinus ENSMICG00000007807 I 0.798
PRDM4 Myotis lucifugus ENSMLUG00000000767 I 0.823
PRDM4 Macaca mulatta ENSMMUG00000015550 I 0.823
PRDM4 Monodelphis domestica ENSMODG00000001448 I 0.817
ENSMPUG00000012238 Mustela putorius furo ENSMPUG00000012238 I 0.823
Prdm4 Mus musculus ENSMUSG00000035529 I 0.823
ENSNLEG00000006748 Nomascus leucogenys ENSNLEG00000006748 I 0.823
PRDM4 Ornithorhynchus anatinus ENSOANG00000005526 I 0.817
ENSOARG00000017955 Ovis aries ENSOARG00000017955 I 0.823
PRDM4 Otolemur garnettii ENSOGAG00000011945 I 0.823
PRDM4 Ochotona princeps ENSOPRG00000010192 I 0.823
ENSP00000228437 Macaca fascicularis ENSP00000228437 I 0.823
ENSP00000228437-D1 Bos grunniens ENSP00000228437-D1 I 0.823
ENSPANG00000022084 Papio anubis ENSPANG00000022084 I 0.823
PRDM4 Procavia capensis ENSPCAG00000009987 I 0.823
ENSPPYG00000004913 Pongo abelii ENSPPYG00000004913 I 0.823
ENSPSIG00000012066 Pelodiscus sinensis ENSPSIG00000012066 I 0.815
PRDM4 Pan troglodytes ENSPTRG00000005400 I 0.823
Prdm4 Rattus norvegicus ENSRNOG00000004962 I 0.820
PRDM4 Sus scrofa ENSSSCG00000000160 I 0.823
ENSSTOG00000016168 Ictidomys tridecemlineatus ENSSTOG00000016168 I 0.823
ENSTGUG00000010962 Taeniopygia guttata ENSTGUG00000010962 I 0.817
ENSTGUG00000015149 Taeniopygia guttata ENSTGUG00000015149 I 0.817
PRDM4 Tursiops truncatus ENSTTRG00000011056 I 0.823
PRDM4 Vicugna pacos ENSVPAG00000002215 I 0.823
Gfo_R004636 Geospiza fortis Gfo_R004636 I 0.817
Myotis_brandtii_PRDM4_10020406 Myotis brandtii Myotis_brandtii_PRDM4_10020406 I 0.823
Pvit_09756 Pogona vitticeps Pvit_09756 I 0.815
Tal_R009708 Tyto alba Tal_R009708 I 0.817