Alligator_sinensis_CCG012513.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG012513.1 T133295_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.819 0.971
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.819 0.971
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.819 0.971
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.819 0.971
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG012513.1 C2H2 ZF 593 615
Alligator_sinensis_CCG012513.1 C2H2 ZF 621 643
Alligator_sinensis_CCG012513.1 C2H2 ZF 649 671
Alligator_sinensis_CCG012513.1 C2H2 ZF 677 699
Alligator_sinensis_CCG012513.1 C2H2 ZF 705 727
Alligator_sinensis_CCG012513.1 C2H2 ZF 733 754

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSMEUG00000004495 Macropus eugenii ENSMEUG00000004495 I 0.827
PRDM4 Ornithorhynchus anatinus ENSOANG00000005526 I 0.827
ENSAPLG00000009846 Anas platyrhynchos ENSAPLG00000009846 I 0.825
ENSFALG00000013342 Ficedula albicollis ENSFALG00000013342 I 0.825
PRDM4 Gallus gallus ENSGALG00000012619 I 0.825
PRDM4 Meleagris gallopavo ENSMGAG00000012815 I 0.825
PRDM4 Monodelphis domestica ENSMODG00000001448 I 0.825
ENSTGUG00000010962 Taeniopygia guttata ENSTGUG00000010962 I 0.825
ENSTGUG00000015149 Taeniopygia guttata ENSTGUG00000015149 I 0.825
Aan_R008654 Calypte anna Aan_R008654 I 0.825
Afo_R011067 Aptenodytes forsteri Afo_R011067 I 0.825
Brh_R007685 Buceros rhinoceros Brh_R007685 I 0.825
Cmyd_10007196 Chelonia mydas Cmyd_10007196 I 0.825
Gfo_R004636 Geospiza fortis Gfo_R004636 I 0.825
Pvit_09756 Pogona vitticeps Pvit_09756 I 0.825
Tal_R009708 Tyto alba Tal_R009708 I 0.825
ENSCPOG00000022385 Cavia porcellus ENSCPOG00000022385 I 0.824
ENSPSIG00000012066 Pelodiscus sinensis ENSPSIG00000012066 I 0.823
ENSAMEG00000016174 Ailuropoda melanoleuca ENSAMEG00000016174 I 0.819
PRDM4 Bos taurus ENSBTAG00000012999 I 0.819
PRDM4 Canis familiaris ENSCAFG00000001788 I 0.819
PRDM4 Callithrix jacchus ENSCJAG00000015261 I 0.819
ENSCSAG00000002896 Chlorocebus sabaeus ENSCSAG00000002896 I 0.819
PRDM4 Dasypus novemcinctus ENSDNOG00000032478 I 0.819
PRDM4 Equus caballus ENSECAG00000015423 I 0.819
PRDM4 Felis catus ENSFCAG00000022478 I 0.819
PRDM4 Homo sapiens ENSG00000110851 D 0.819
PRDM4 Gorilla gorilla ENSGGOG00000001244 I 0.819
PRDM4 Loxodonta africana ENSLAFG00000001483 I 0.819
PRDM4 Myotis lucifugus ENSMLUG00000000767 I 0.819
PRDM4 Macaca mulatta ENSMMUG00000015550 I 0.819
ENSMPUG00000012238 Mustela putorius furo ENSMPUG00000012238 I 0.819
Prdm4 Mus musculus ENSMUSG00000035529 I 0.819
ENSNLEG00000006748 Nomascus leucogenys ENSNLEG00000006748 I 0.819
ENSOARG00000017955 Ovis aries ENSOARG00000017955 I 0.819
PRDM4 Otolemur garnettii ENSOGAG00000011945 I 0.819
PRDM4 Ochotona princeps ENSOPRG00000010192 I 0.819
ENSPANG00000022084 Papio anubis ENSPANG00000022084 I 0.819
PRDM4 Procavia capensis ENSPCAG00000009987 I 0.819
ENSPPYG00000004913 Pongo abelii ENSPPYG00000004913 I 0.819
PRDM4 Pan troglodytes ENSPTRG00000005400 I 0.819
Prdm4 Rattus norvegicus ENSRNOG00000004962 I 0.819
PRDM4 Sus scrofa ENSSSCG00000000160 I 0.819
ENSSTOG00000016168 Ictidomys tridecemlineatus ENSSTOG00000016168 I 0.819
PRDM4 Tursiops truncatus ENSTTRG00000011056 I 0.819
PRDM4 Vicugna pacos ENSVPAG00000002215 I 0.819
ENSP00000228437-D1 Bos grunniens ENSP00000228437-D1 I 0.819
ENSP00000228437 Macaca fascicularis ENSP00000228437 I 0.819
Myotis_brandtii_PRDM4_10020406 Myotis brandtii Myotis_brandtii_PRDM4_10020406 I 0.819
PRDM4 Choloepus hoffmanni ENSCHOG00000001744 I 0.817
PRDM4 Anolis carolinensis ENSACAG00000014907 I 0.815
PRDM4 Microcebus murinus ENSMICG00000007807 I 0.794
PRDM4 Erinaceus europaeus ENSEEUG00000006569 I 0.777