gfi1ab (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000044457 T090929_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.823 0.971
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.823 0.971
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.823 0.971
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.823 0.971
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.823 0.971
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.823 0.971
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.823 0.971
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.823 0.971
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.821 0.964
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.787 0.964
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.784 0.884
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.784 0.884
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.784 0.884
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.784 0.884
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.784 0.884
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.784 0.884
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.782 0.877
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.782 0.877
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.782 0.877
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.774 0.877
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.773 0.855
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000065138 C2H2 ZF 229 252
ENSDARP00000065138 C2H2 ZF 258 280
ENSDARP00000065138 C2H2 ZF 286 308
ENSDARP00000065138 C2H2 ZF 314 336
ENSDARP00000065138 C2H2 ZF 342 364
ENSDARP00000065138 C2H2 ZF 370 393

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001674 Calypte anna Aan_R001674 I
Afo_R011034 Aptenodytes forsteri Afo_R011034 I
Alligator_sinensis_CCG004420.1 Alligator sinensis Alligator_sinensis_CCG004420.1 I
Brh_R003425 Buceros rhinoceros Brh_R003425 I
Cmyd_10012311 Chelonia mydas Cmyd_10012311 I
ZBTB1 Anolis carolinensis ENSACAG00000015782 I
ENSAMEG00000019557 Ailuropoda melanoleuca ENSAMEG00000019557 I
ENSAPLG00000001073 Anas platyrhynchos ENSAPLG00000001073 I
ZBTB1 Bos taurus ENSBTAG00000040551 I
ZBTB1 Canis familiaris ENSCAFG00000016030 I
ZBTB1 Callithrix jacchus ENSCJAG00000019591 I
ZBTB1 Cavia porcellus ENSCPOG00000011379 I
ZBTB1 Dasypus novemcinctus ENSDNOG00000015051 I
ZBTB1 Felis catus ENSFCAG00000031472 I
ZBTB1 Homo sapiens ENSG00000126804 I
ZBTB1 Gorilla gorilla ENSGGOG00000016483 I
ENSLACG00000016384 Latimeria chalumnae ENSLACG00000016384 I
ZBTB1 Loxodonta africana ENSLAFG00000018528 I
ZBTB1 Meleagris gallopavo ENSMGAG00000015392 I
ZBTB1 Myotis lucifugus ENSMLUG00000016560 I
ZBTB1 Monodelphis domestica ENSMODG00000023946 I
Zbtb1 Mus musculus ENSMUSG00000033454 D
ENSNLEG00000014246 Nomascus leucogenys ENSNLEG00000014246 I
ENSOARG00000001006 Ovis aries ENSOARG00000001006 I
ZBTB1 Oryctolagus cuniculus ENSOCUG00000011740 I
ZBTB1 Otolemur garnettii ENSOGAG00000016795 I
ZBTB1 Ochotona princeps ENSOPRG00000010400 I
ENSP00000378201 Macaca fascicularis ENSP00000378201 I
ENSP00000378201-D1 Bos grunniens ENSP00000378201-D1 I
ZBTB1 Pan troglodytes ENSPTRG00000006438 I
ZBTB1 Pteropus vampyrus ENSPVAG00000017582 I
ENSSHAG00000010188 Sarcophilus harrisii ENSSHAG00000010188 I
ZBTB1 Sus scrofa ENSSSCG00000023724 I
ZBTB1 Taeniopygia guttata ENSTGUG00000012931 I
ZBTB1 Tursiops truncatus ENSTTRG00000000531 I
ZBTB1 Vicugna pacos ENSVPAG00000004877 I
Gfo_R006806 Geospiza fortis Gfo_R006806 I
Ogr05927 Ophisaurus gracilis Ogr05927 I
Pvit_18915 Pogona vitticeps Pvit_18915 I
Tal_R000310 Tyto alba Tal_R000310 I