ENSLACG00000002568 (Latimeria chalumnae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLACG00000002568 T096957_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLAG1
M06465_2.00 		Homo sapiens
CCCCCKWDGGCCCC
GGGGCCHWMGGGGG		 B1H
Mathelier et al.(2014)
MA0163.1 		0.817 0.975
PLAG1
M10286_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PLAG1_01 		0.817 0.975
PLAG1
M10287_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PLAG1_02 		0.817 0.975
PLAG1
M10288_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PLAG1_08 		0.817 0.975
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000002874 C2H2 ZF 36 58
ENSLACP00000002874 C2H2 ZF 64 88
ENSLACP00000002874 C2H2 ZF 94 116
ENSLACP00000002874 C2H2 ZF 123 145
ENSLACP00000002874 C2H2 ZF 152 174
ENSLACP00000002874 C2H2 ZF 187 209
ENSLACP00000002874 C2H2 ZF 215 238

Links

Other C2H2 ZF family TFs
Other Latimeria chalumnae TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29728.m000821 Ricinus communis 29728.m000821 N
Aquca_023_00033 Aquilegia coerulea Aquca_023_00033 N
BGIOSGA009486 Oryza indica BGIOSGA009486 N
Bostr.25463s0361 Boechera stricta Bostr.25463s0361 N
Cagra.1008s0003 Capsella grandiflora Cagra.1008s0003 N
Carubv10001958m.g Capsella rubella Carubv10001958m.g N
cassava25358.m1 Manihot esculenta cassava25358.m1 N
Ca_04306 Cicer arietinum Ca_04306 N
Ciclev10002467m.g Citrus clementina Ciclev10002467m.g N
Cla012103 Citrullus lanatus Cla012103 N
Cucsa.088330 Cucumis sativus Cucsa.088330 N
Eucgr.F04126 Eucalyptus grandis Eucgr.F04126 N
gene29104-v1.0-hybrid Fragaria vesca gene29104-v1.0-hybrid N
GLYMA10G36001 Glycine max GLYMA10G36001 N
GLYMA20G31580 Glycine max GLYMA20G31580 N
Gorai.005G074700 Gossypium raimondii Gorai.005G074700 N
Lus10009420.g Linum usitatissimum Lus10009420.g N
mgf002286m Mimulus guttatus mgf002286m N
MLOC_10423 Hordeum vulgare MLOC_10423 N
MTR_1g096340 Medicago truncatula MTR_1g096340 N
OBART03G40280 Oryza barthii OBART03G40280 N
OGLUM03G40150 Oryza glumaepatula OGLUM03G40150 N
OLONG_012145 Oryza longistaminata OLONG_012145 N
ONIVA03G42160 Oryza nivara ONIVA03G42160 N
OPUNC03G37470 Oryza punctata OPUNC03G37470 N
OPUNC03G37490 Oryza punctata OPUNC03G37490 N
orange1.1g028218m.g Citrus sinensis orange1.1g028218m.g N
ORGLA03G0371400 Oryza glaberrima ORGLA03G0371400 N
ORUFI03G42080 Oryza rufipogon ORUFI03G42080 N
OS03G0838900 Oryza sativa OS03G0838900 N
Pavir.J01833 Panicum virgatum Pavir.J01833 N
PGSC0003DMG400009226 Solanum tuberosum PGSC0003DMG400009226 N
PK00213.1 Cannabis sativa PK00213.1 N
Pm022190 Prunus mume Pm022190 N
POPTR_0013s11780 Populus trichocarpa POPTR_0013s11780 N
PRUPE_ppa026991mg Prunus persica PRUPE_ppa026991mg N
SapurV1A.0179s0060 Salix purpurea SapurV1A.0179s0060 N
Sb01g001940 Sorghum bicolor Sb01g001940 N
Solyc11g017430.1 Solanum lycopersicum Solyc11g017430.1 N
TCM_036345 Theobroma cacao TCM_036345 N
Thhalv10028979m.g Eutrema salsugineum Thhalv10028979m.g N
VIT_18s0072g01130 Vitis vinifera VIT_18s0072g01130 N