ENSPFOG00000019062 (Poecilia formosa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPFOG00000019062 T106422_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.803 0.939
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.803 0.939
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.803 0.939
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.799 0.930
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.799 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPFOP00000019173 C2H2 ZF 241 263
ENSPFOP00000019173 C2H2 ZF 269 291
ENSPFOP00000019173 C2H2 ZF 599 621
ENSPFOP00000019173 C2H2 ZF 627 649
ENSPFOP00000019173 C2H2 ZF 657 680

Links

Other C2H2 ZF family TFs
Other Poecilia formosa TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27914.m000423 Ricinus communis 27914.m000423 N 0.000
AT3G59470 Arabidopsis thaliana AT3G59470 N 0.000
Bo6g076470 Brassica oleracea Bo6g076470 N 0.000
Bo8g093280 Brassica oleracea Bo8g093280 N 0.000
Bostr.20903s0171 Boechera stricta Bostr.20903s0171 N 0.000
Bra003377 Brassica rapa Bra003377 N 0.000
Carubv10017836m.g Capsella rubella Carubv10017836m.g N 0.000
cassava30288.valid.m1 Manihot esculenta cassava30288.valid.m1 N 0.000
cassava38728.m1 Manihot esculenta cassava38728.m1 N 0.000
Ca_02686 Cicer arietinum Ca_02686 N 0.000
Ciclev10021841m.g Citrus clementina Ciclev10021841m.g N 0.000
Cla010925 Citrullus lanatus Cla010925 N 0.000
Cucsa.094440 Cucumis sativus Cucsa.094440 N 0.000
evm.TU.supercontig_195.42 Carica papaya evm.TU.supercontig_195.42 N 0.000
gene21669-v1.0-hybrid Fragaria vesca gene21669-v1.0-hybrid N 0.000
GLYMA11G13610 Glycine max GLYMA11G13610 N 0.000
GLYMA12G05600 Glycine max GLYMA12G05600 N 0.000
GLYMA15G03440 Glycine max GLYMA15G03440 N 0.000
Gorai.005G016700 Gossypium raimondii Gorai.005G016700 N 0.000
Gorai.005G126700 Gossypium raimondii Gorai.005G126700 N 0.000
MDP0000348552 Malus domestica MDP0000348552 N 0.000
MDP0000618200 Malus domestica MDP0000618200 N 0.000
mgf020729m Mimulus guttatus mgf020729m N 0.000
MTR_2g098920 Medicago truncatula MTR_2g098920 N 0.000
MTR_4g067290 Medicago truncatula MTR_4g067290 N 0.000
orange1.1g025532m.g Citrus sinensis orange1.1g025532m.g N 0.000
PGSC0003DMG402027016 Solanum tuberosum PGSC0003DMG402027016 N 0.000
PK13380.1 Cannabis sativa PK13380.1 N 0.000
POPTR_0007s01870 Populus trichocarpa POPTR_0007s01870 N 0.000
POPTR_0017s05780 Populus trichocarpa POPTR_0017s05780 N 0.000
PRUPE_ppa011567mg Prunus persica PRUPE_ppa011567mg N 0.000
SapurV1A.0834s0190 Salix purpurea SapurV1A.0834s0190 N 0.000
SapurV1A.1078s0040 Salix purpurea SapurV1A.1078s0040 N 0.000
SapurV1A.4098s0020 Salix purpurea SapurV1A.4098s0020 N 0.000
scaffold_503155.1 Arabidopsis lyrata scaffold_503155.1 N 0.000
Solyc06g073200.2 Solanum lycopersicum Solyc06g073200.2 N 0.000
TCM_020020 Theobroma cacao TCM_020020 N 0.000
Thhalv10006173m.g Eutrema salsugineum Thhalv10006173m.g N 0.000
VIT_05s0102g00690 Vitis vinifera VIT_05s0102g00690 N 0.000