CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Mzf1
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000027550
T109144_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein homodimerization activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Orthologous to human MZF1 (myeloid zinc finger 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MZF1
M02663_2.00
Homo sapiens
TCCCCN
NGGGGA
SELEX
Mathelier et al.(2014)
MA0056.1
0.816
0.970
MZF1
M02664_2.00
Homo sapiens
BYHCCCMTMV
BKAKGGGDRV
SELEX
Mathelier et al.(2014)
MA0057.1
0.816
0.970
MZF1
M08236_2.00
Homo sapiens
CCATTTT
AAAATGG
ChIP-seq
Najafabadi et al.(2015b)
MZF1
0.816
0.970
MZF1
M08286_2.00
Homo sapiens
HAARATGGCKSCYNN
NNRGSMGCCATYTTD
ChIP-seq
Schmitges et al.(2016)
P28698.MEME
0.816
0.970
MZF1
M08863_2.00
Homo sapiens
BYNMWTCCCYHYB
VRDRGGGAWKNRV
Misc
Kulakovskiy et al.(2013)
MZF1_HUMAN.H11MO.0.B
0.816
0.970
MZF1
M10133_2.00
Homo sapiens
TCCCCNHN
NDNGGGGA
Transfac
Matys et al.(2006)
V$MZF1_01
0.816
0.970
MZF1
M10134_2.00
Homo sapiens
KWBCCCCTMVHHM
KDDBKAGGGGVAM
Transfac
Matys et al.(2006)
V$MZF1_02
0.816
0.970
MZF1
M10135_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MZF1_Q5_01
0.816
0.970
MZF1
M10136_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MZF1_Q5
0.816
0.970
Mzf1
M00773_2.00
Mus musculus
RATCCCCH
DGGGGATY
PBM
Weirauch et al.(2013)
pTH3991
0.797
0.956
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000055361
C2H2 ZF
358
379
RCDVCGKVFSQRSNLLRHQKIH
ENSRNOP00000055361
C2H2 ZF
385
407
FVCGECGRSFSRSSHLLRHQLTH
ENSRNOP00000055361
C2H2 ZF
413
435
FVCRDCGQGFVRSARLEEHRRVH
ENSRNOP00000055361
C2H2 ZF
441
463
FRCAECGQSFRQRSNLLQHQRIH
ENSRNOP00000055361
C2H2 ZF
486
508
FPCSECCESFPRRAVLLEHQAVH
ENSRNOP00000055361
C2H2 ZF
514
536
FGCVECGERFGRRSVLLQHRRVH
ENSRNOP00000055361
C2H2 ZF
542
564
FACAECGQSFRQRSNLTQHRRIH
ENSRNOP00000055361
C2H2 ZF
570
592
FACTECGKAFRQRPTLTQHLRVH
ENSRNOP00000055361
C2H2 ZF
598
620
FACPECGQRFSQRLKLTRHQRTH
ENSRNOP00000055361
C2H2 ZF
626
648
YRCSECGLGFTQVSRLTEHQRIH
ENSRNOP00000055361
C2H2 ZF
654
676
FACPECGQSFRQHANLIQHRRIH
ENSRNOP00000055361
C2H2 ZF
682
704
YACPECGKAFRQRPTLTQHLRTH
ENSRNOP00000055361
C2H2 ZF
710
732
FACQDCGRRFHQSTKLIQHQRIH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy