CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Atoh1
(
Mus musculus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSMUSG00000073043
T035754_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin DNA binding activity. Involved in positive regulation of neuron differentiation and positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including generation of neurons; inner ear morphogenesis; and positive regulation of inner ear auditory receptor cell differentiation. Located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; ear; genitourinary system; and skin. Orthologous to human ATOH1 (atonal bHLH transcription factor 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Atoh1
M01754_2.00
Mus musculus
NMCATATGKN
NMCATATGKN
PBM
Weirauch et al.(2014)
pTH5074
(Direct)
(Direct)
Atoh1
M02820_2.00
Mus musculus
RMCATATGBY
RVCATATGKY
SELEX
Jolma et al.(2013)
Atoh1_1
(Direct)
(Direct)
Atoh1
M08779_2.00
Mus musculus
RRCAGMTGG
CCAKCTGYY
Misc
Kulakovskiy et al.(2013)
ATOH1_MOUSE.H11MO.0.B
(Direct)
(Direct)
Atoh1
M09480_2.00
Mus musculus
NNRVCAKMTGBY
RVCAKMTGBYNN
Misc
Heinz et al.(2010)
Cerebellum-Atoh1_GSE22111
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATOH1
M04166_2.00
Homo sapiens
RACAGCTGYY
RRCAGCTGTY
SELEX
Yin et al.(2017)
ATOH1_eDBD_HT-SELEX_1
0.914
1.000
ATOH1
M04167_2.00
Homo sapiens
RVCATATGBY
RVCATATGBY
SELEX
Yin et al.(2017)
ATOH1_eDBD_HT-SELEX_2
0.914
1.000
ATOH1
M08738_2.00
Homo sapiens
RRCAGMTGG
CCAKCTGYY
Misc
Kulakovskiy et al.(2013)
ATOH1_HUMAN.H11MO.0.B
0.914
1.000
ATOH1
M09877_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MATH1_Q2
0.914
1.000
ATOH1
M04168_2.00
Homo sapiens
AACAGCTGTY
RACAGCTGTT
SELEX
Yin et al.(2017)
ATOH1_eDBD_Methyl-HT-SELEX_1
0.914
1.000
ATOH1
M04169_2.00
Homo sapiens
AVCATATGBY
RVCATATGBT
SELEX
Yin et al.(2017)
ATOH1_eDBD_Methyl-HT-SELEX_2
0.914
1.000
For this family, TFs with SR scores >
0.838
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01754_2.00
bHLH
16
68
RRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALS
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000098903
bHLH
157
209
RRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALS
Links
Other
bHLH
family TFs
Other
Mus musculus
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ATOH1
Ochotona princeps
ENSOPRG00000008973
I
0.914
ENSPANG00000000252
Papio anubis
ENSPANG00000000252
I
0.914
ENSPPYG00000015283
Pongo abelii
ENSPPYG00000015283
I
0.914
ATOH1
Otolemur garnettii
ENSOGAG00000030783
I
0.914
ENSNLEG00000018621
Nomascus leucogenys
ENSNLEG00000018621
I
0.914
ATOH1
Macaca mulatta
ENSMMUG00000002367
I
0.914
ATOH1
Monodelphis domestica
ENSMODG00000019270
I
0.914
ENSMPUG00000019092
Mustela putorius furo
ENSMPUG00000019092
I
0.914
ATOH1
Pan troglodytes
ENSPTRG00000031141
I
0.914
Atoh1
Rattus norvegicus
ENSRNOG00000006383
I
0.914
ENSP00000302216
Macaca fascicularis
ENSP00000302216
I
0.914
Myotis_brandtii_ATOH1_10005345
Myotis brandtii
Myotis_brandtii_ATOH1_10005345
I
0.914
XP_002937284
Xenopus tropicalis
XP_002937284
I
0.914
ENSBTAP00000003762-D1
Bos grunniens
ENSBTAP00000003762-D1
I
0.914
ATOH1
Tupaia belangeri
ENSTBEG00000003291
I
0.914
ENSSHAG00000009094
Sarcophilus harrisii
ENSSHAG00000009094
I
0.914
ATOH1
Sus scrofa
ENSSSCG00000009196
I
0.914
ENSSTOG00000009183
Ictidomys tridecemlineatus
ENSSTOG00000009183
I
0.914
ATOH1
Myotis lucifugus
ENSMLUG00000008044
I
0.914
ATOH1
Oryctolagus cuniculus
ENSOCUG00000013154
I
0.914
ATOH1
Dasypus novemcinctus
ENSDNOG00000018799
I
0.914
ATOH1
Equus caballus
ENSECAG00000001213
I
0.914
ENSMEUG00000009664
Macropus eugenii
ENSMEUG00000009664
I
0.914
ATOH1
Homo sapiens
ENSG00000172238
D
0.914
ENSCSAG00000000408
Chlorocebus sabaeus
ENSCSAG00000000408
I
0.914
ATOH1
Callithrix jacchus
ENSCJAG00000022028
I
0.914
ATOH1
Bos taurus
ENSBTAG00000002895
I
0.914
ATOH1
Canis familiaris
ENSCAFG00000010016
I
0.914
ATOH1
Choloepus hoffmanni
ENSCHOG00000000748
I
0.914
ATOH1
Gorilla gorilla
ENSGGOG00000001096
I
0.914
ATOH1
Echinops telfairi
ENSETEG00000019807
I
0.914
ENSLAFG00000023246
Loxodonta africana
ENSLAFG00000023246
I
0.914
ENSLACG00000005491
Latimeria chalumnae
ENSLACG00000005491
I
0.890
atoh1a
Danio rerio
ENSDARG00000055294
I
0.884
ENSLOCG00000017552
Lepisosteus oculatus
ENSLOCG00000017552
I
0.884
ENSLACG00000013212
Latimeria chalumnae
ENSLACG00000013212
I
0.868
atoh1a
Tetraodon nigroviridis
ENSTNIG00000017584
I
0.860
atoh1a
Takifugu rubripes
ENSTRUG00000012647
I
0.860
atoh1a
Oryzias latipes
ENSORLG00000004876
I
0.860
ENSONIG00000015058
Oreochromis niloticus
ENSONIG00000015058
I
0.860
ENSXMAG00000015349
Xiphophorus maculatus
ENSXMAG00000015349
I
0.860
ENSPFOG00000019101
Poecilia formosa
ENSPFOG00000019101
I
0.860
ENSLOCG00000011944
Lepisosteus oculatus
ENSLOCG00000011944
I
0.842
ENSAMXG00000003022
Astyanax mexicanus
ENSAMXG00000003022
I
0.842
ENSPFOG00000023785
Poecilia formosa
ENSPFOG00000023785
I
0.842
ENSXMAG00000009786
Xiphophorus maculatus
ENSXMAG00000009786
I
0.842
ENSONIG00000017784
Oreochromis niloticus
ENSONIG00000017784
I
0.842
atoh1b
Danio rerio
ENSDARG00000099564
I
0.842
Sakowv30002492m.g
Saccoglossus kowalevskii
Sakowv30002492m.g
I
0.840
ENSGMOG00000019019
Gadus morhua
ENSGMOG00000019019
I
0.840
ISCW003667
Ixodes scapularis
ISCW003667
I
0.838