atoh1a (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000017584 T037793_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Atoh1
M01754_2.00 		Mus musculus
NMCATATGKN
NMCATATGKN		 PBM
Weirauch et al.(2014)
pTH5074 		0.860 0.885
Atoh1
M02820_2.00 		Mus musculus
RMCATATGBY
RVCATATGKY		 SELEX
Jolma et al.(2013)
Atoh1_1 		0.860 0.885
ATOH1
M04166_2.00 		Homo sapiens
RACAGCTGYY
RRCAGCTGTY		 SELEX
Yin et al.(2017)
ATOH1_eDBD_HT-SELEX_1 		0.860 0.885
ATOH1
M04167_2.00 		Homo sapiens
RVCATATGBY
RVCATATGBY		 SELEX
Yin et al.(2017)
ATOH1_eDBD_HT-SELEX_2 		0.860 0.885
ATOH1
M08738_2.00 		Homo sapiens
RRCAGMTGG
CCAKCTGYY		 Misc
Kulakovskiy et al.(2013)
ATOH1_HUMAN.H11MO.0.B 		0.860 0.885
Atoh1
M08779_2.00 		Mus musculus
RRCAGMTGG
CCAKCTGYY		 Misc
Kulakovskiy et al.(2013)
ATOH1_MOUSE.H11MO.0.B 		0.860 0.885
Atoh1
M09480_2.00 		Mus musculus
NNRVCAKMTGBY
RVCAKMTGBYNN		 Misc
Heinz et al.(2010)
Cerebellum-Atoh1_GSE22111 		0.860 0.885
ATOH1
M09877_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MATH1_Q2 		0.860 0.885
ATOH1
M04168_2.00 		Homo sapiens
AACAGCTGTY
RACAGCTGTT		 SELEX
Yin et al.(2017)
ATOH1_eDBD_Methyl-HT-SELEX_1 		0.860 0.885
ATOH1
M04169_2.00 		Homo sapiens
AVCATATGBY
RVCATATGBT		 SELEX
Yin et al.(2017)
ATOH1_eDBD_Methyl-HT-SELEX_2 		0.860 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000020730 bHLH 126 178

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSONIG00000015058 Oreochromis niloticus ENSONIG00000015058 I 0.914
atoh1a Oryzias latipes ENSORLG00000004876 I 0.914
ENSPFOG00000019101 Poecilia formosa ENSPFOG00000019101 I 0.914
atoh1a Takifugu rubripes ENSTRUG00000012647 I 0.914
ENSXMAG00000015349 Xiphophorus maculatus ENSXMAG00000015349 I 0.914
ENSGMOG00000019019 Gadus morhua ENSGMOG00000019019 I 0.894
atoh1a Danio rerio ENSDARG00000055294 I 0.890
ENSLOCG00000017552 Lepisosteus oculatus ENSLOCG00000017552 I 0.890
ENSLACG00000005491 Latimeria chalumnae ENSLACG00000005491 I 0.884
atoh1a Gasterosteus aculeatus ENSGACG00000007342 N 0.868
ATOH1 Bos taurus ENSBTAG00000002895 I 0.860
ATOH1 Canis familiaris ENSCAFG00000010016 I 0.860
ATOH1 Choloepus hoffmanni ENSCHOG00000000748 I 0.860
ATOH1 Callithrix jacchus ENSCJAG00000022028 I 0.860
ENSCSAG00000000408 Chlorocebus sabaeus ENSCSAG00000000408 I 0.860
ATOH1 Dasypus novemcinctus ENSDNOG00000018799 I 0.860
ATOH1 Equus caballus ENSECAG00000001213 I 0.860
ATOH1 Echinops telfairi ENSETEG00000019807 I 0.860
ATOH1 Homo sapiens ENSG00000172238 D 0.860
ATOH1 Gorilla gorilla ENSGGOG00000001096 I 0.860
ENSLAFG00000023246 Loxodonta africana ENSLAFG00000023246 I 0.860
ENSMEUG00000009664 Macropus eugenii ENSMEUG00000009664 I 0.860
ATOH1 Myotis lucifugus ENSMLUG00000008044 I 0.860
ATOH1 Macaca mulatta ENSMMUG00000002367 I 0.860
ATOH1 Monodelphis domestica ENSMODG00000019270 I 0.860
ENSMPUG00000019092 Mustela putorius furo ENSMPUG00000019092 I 0.860
Atoh1 Mus musculus ENSMUSG00000073043 D 0.860
ENSNLEG00000018621 Nomascus leucogenys ENSNLEG00000018621 I 0.860
ATOH1 Oryctolagus cuniculus ENSOCUG00000013154 I 0.860
ATOH1 Otolemur garnettii ENSOGAG00000030783 I 0.860
ATOH1 Ochotona princeps ENSOPRG00000008973 I 0.860
ENSPANG00000000252 Papio anubis ENSPANG00000000252 I 0.860
ENSPPYG00000015283 Pongo abelii ENSPPYG00000015283 I 0.860
ATOH1 Pan troglodytes ENSPTRG00000031141 I 0.860
Atoh1 Rattus norvegicus ENSRNOG00000006383 I 0.860
ENSSHAG00000009094 Sarcophilus harrisii ENSSHAG00000009094 I 0.860
ATOH1 Sus scrofa ENSSSCG00000009196 I 0.860
ENSSTOG00000009183 Ictidomys tridecemlineatus ENSSTOG00000009183 I 0.860
ATOH1 Tupaia belangeri ENSTBEG00000003291 I 0.860
ENSBTAP00000003762-D1 Bos grunniens ENSBTAP00000003762-D1 I 0.860
ENSP00000302216 Macaca fascicularis ENSP00000302216 I 0.860
Myotis_brandtii_ATOH1_10005345 Myotis brandtii Myotis_brandtii_ATOH1_10005345 I 0.860
XP_002937284 Xenopus tropicalis XP_002937284 I 0.860