ENSSTOG00000014531 (Ictidomys tridecemlineatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSSTOG00000014531 T110779_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF140
M04621_2.00 		Homo sapiens
DRCAATTCCGCTCN
NGAGCGGAATTGYH		 SELEX
Yin et al.(2017)
ZNF140_eDBD_HT-SELEX 		0.784 0.913
ZNF140
M08372_2.00 		Homo sapiens
CAATTCYGCYCHNNNNNNNNNNNB
VNNNNNNNNNNNDGRGCRGAATTG		 ChIP-seq
Schmitges et al.(2016)
P52738_3-10.RCADE 		0.784 0.913
ZNF140
M08945_2.00 		Homo sapiens
NNNDNYBYWGCAATTCYRCTCCHN
NDGGAGYRGAATTGCWRVRNHNNN		 Misc
Kulakovskiy et al.(2013)
ZN140_HUMAN.H11MO.0.C 		0.784 0.913
ZNF140
M04622_2.00 		Homo sapiens
NRCAATTCCGCTCV
BGAGCGGAATTGYN		 SELEX
Yin et al.(2017)
ZNF140_eDBD_Methyl-HT-SELEX 		0.784 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000013015 C2H2 ZF 161 183
ENSSTOP00000013015 C2H2 ZF 189 211
ENSSTOP00000013015 C2H2 ZF 217 239
ENSSTOP00000013015 C2H2 ZF 245 267
ENSSTOP00000013015 C2H2 ZF 273 295
ENSSTOP00000013015 C2H2 ZF 301 323
ENSSTOP00000013015 C2H2 ZF 329 351
ENSSTOP00000013015 C2H2 ZF 357 379
ENSSTOP00000013015 C2H2 ZF 385 407
ENSSTOP00000013015 C2H2 ZF 413 435

Links

Other C2H2 ZF family TFs
Other Ictidomys tridecemlineatus TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_007_00963 Aquilegia coerulea Aquca_007_00963 N 0.000
cassava23935.valid.m1 Manihot esculenta cassava23935.valid.m1 N 0.000
Ciclev10000383m.g Citrus clementina Ciclev10000383m.g N 0.000
Eucgr.F03610 Eucalyptus grandis Eucgr.F03610 N 0.000
evm.TU.contig_24967.4 Carica papaya evm.TU.contig_24967.4 N 0.000
gene29166-v1.0-hybrid Fragaria vesca gene29166-v1.0-hybrid N 0.000
MDP0000722905 Malus domestica MDP0000722905 N 0.000
orange1.1g004450m.g Citrus sinensis orange1.1g004450m.g N 0.000
POPTR_0005s27900 Populus trichocarpa POPTR_0005s27900 N 0.000
PRUPE_ppa026999mg Prunus persica PRUPE_ppa026999mg N 0.000
SapurV1A.0554s0220 Salix purpurea SapurV1A.0554s0220 N 0.000
TCM_034806 Theobroma cacao TCM_034806 N 0.000