klf3 (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000001391 T112206_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KLF3
M04418_2.00 		Homo sapiens
RRCCRCGCCCH
DGGGCGYGGYY		 SELEX
Yin et al.(2017)
KLF3_FL_HT-SELEX 		0.824 0.957
KLF3
M08876_2.00 		Homo sapiens
NSNNVCCMCRCCCHBBBBN
NVVVVDGGGYGKGGBNNSN		 Misc
Kulakovskiy et al.(2013)
KLF3_HUMAN.H11MO.0.B 		0.824 0.957
Klf3
M08982_2.00 		Mus musculus
NSNNVCCMCRCCCHBBBBN
NVVVVDGGGYGKGGBNNSN		 Misc
Kulakovskiy et al.(2013)
KLF3_MOUSE.H11MO.0.A 		0.824 0.957
KLF3
M10172_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$KLF3_Q3_01 		0.824 0.957
KLF3
M10173_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$KLF3_Q3 		0.824 0.957
KLF3
M04419_2.00 		Homo sapiens
DRCCACGCCCH
DGGGCGTGGYH		 SELEX
Yin et al.(2017)
KLF3_FL_Methyl-HT-SELEX_1 		0.824 0.957
KLF3
M04420_2.00 		Homo sapiens
RRSCGCARCCCN
NGGGYTGCGSYY		 SELEX
Yin et al.(2017)
KLF3_FL_Methyl-HT-SELEX_2 		0.824 0.957
KLF5
M04410_2.00 		Homo sapiens
NMCACRCCCH
DGGGYGTGKN		 SELEX
Yin et al.(2017)
KLF5_eDBD_HT-SELEX 		0.800 0.841
KLF5
M08086_2.00 		Homo sapiens
BCCMCDCCCH
DGGGHGKGGV		 ChIP-seq
Mathelier et al.(2014)
MA0599.1 		0.800 0.841
KLF5
M08868_2.00 		Homo sapiens
NHVNRCCMCDCCCH
DGGGHGKGGYNBDN		 Misc
Kulakovskiy et al.(2013)
KLF5_HUMAN.H11MO.0.A 		0.800 0.841
Klf5
M08965_2.00 		Mus musculus
KCCMCDCCCHBBBCH
DGVVVDGGGHGKGGM		 Misc
Kulakovskiy et al.(2013)
KLF5_MOUSE.H11MO.0.A 		0.800 0.841
KLF5
M09502_2.00 		Homo sapiens
GCCMCRCCCH
DGGGYGKGGC		 Misc
Heinz et al.(2010)
LoVo-KLF5_GSE49402 		0.800 0.841
KLF5
M10149_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BTEB2_Q3_01 		0.800 0.841
KLF5
M10150_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BTEB2_Q3 		0.800 0.841
KLF5
M04411_2.00 		Homo sapiens
NMCACRCCYH
DRGGYGTGKN		 SELEX
Yin et al.(2017)
KLF5_eDBD_Methyl-HT-SELEX 		0.800 0.841
Klf12
M00787_2.00 		Mus musculus
NNHMCRCCCH
DGGGYGKDNN		 PBM
Weirauch et al.(2013)
pTH0977 		0.798 0.899
Klf12
M02937_2.00 		Mus musculus
GRCCACGCCCWHHHN
NDDDWGGGCGTGGYC		 SELEX
Jolma et al.(2013)
Klf12_1 		0.798 0.899
KLF12
M04430_2.00 		Homo sapiens
DRCCACGCCCH
DGGGCGTGGYH		 SELEX
Yin et al.(2017)
KLF12_FL_HT-SELEX 		0.798 0.899
KLF12
M08299_2.00 		Homo sapiens
SBNVGCCMCGCCCHB
VDGGGCGKGGCBNVS		 ChIP-seq
Schmitges et al.(2016)
Q9Y4X4.MEME 		0.798 0.899
KLF12
M08879_2.00 		Homo sapiens
GCCCCGCCCYB
VRGGGCGGGGC		 Misc
Kulakovskiy et al.(2013)
KLF12_HUMAN.H11MO.0.C 		0.798 0.899
KLF12
M10186_2.00 		Homo sapiens
HMYACDG
CHGTRKD		 Transfac
Matys et al.(2006)
V$AP2REP_01 		0.798 0.899
KLF12
M04431_2.00 		Homo sapiens
RGSCGACGCCCN
NGGGCGTCGSCY		 SELEX
Yin et al.(2017)
KLF12_FL_Methyl-HT-SELEX_1 		0.798 0.899
KLF12
M04432_2.00 		Homo sapiens
NRCCACGCCCH
DGGGCGTGGYN		 SELEX
Yin et al.(2017)
KLF12_FL_Methyl-HT-SELEX_2 		0.798 0.899
Klf7
M00134_2.00 		Mus musculus
NHHMCRCCCH
DGGGYGKDDN		 PBM
Badis et al.(2009)
Klf7_0974 		0.797 0.812
KLF7
M08298_2.00 		Homo sapiens
VVCHMCGCCCH
DGGGCGKDGBB		 ChIP-seq
Schmitges et al.(2016)
O75840.MEME 		0.797 0.812
KLF4
M04463_2.00 		Homo sapiens
NVCCACRCCCH
DGGGYGTGGBN		 SELEX
Yin et al.(2017)
KLF4_eDBD_HT-SELEX 		0.784 0.812
KLF4
M08091_2.00 		Homo sapiens
MCACACCCWNN
NNWGGGTGTGK		 ChIP-seq
Mathelier et al.(2014)
MA0039.3 		0.784 0.812
Klf4
M08021_2.00 		Mus musculus
VRCCMCRCCCH
DGGGYGKGGYB		 ChIP-seq
Chen et al.(2011)
SRP000217_Klf4 		0.784 0.812
KLF4
M08243_2.00 		Homo sapiens
RCCMCRCCCH
DGGGYGKGGY		 ChIP-seq
Najafabadi et al.(2015b)
KLF14 		0.784 0.812
KLF4
M08894_2.00 		Homo sapiens
RCCMCRCCCH
DGGGYGKGGY		 Misc
Kulakovskiy et al.(2013)
KLF4_HUMAN.H11MO.0.A 		0.784 0.812
Klf4
M08964_2.00 		Mus musculus
GCCMCRCCCWBYBBN
NVVRVWGGGYGKGGC		 Misc
Kulakovskiy et al.(2013)
KLF4_MOUSE.H11MO.0.A 		0.784 0.812
KLF4
M10217_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GKLF_02 		0.784 0.812
KLF4
M10218_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GKLF_Q3_01 		0.784 0.812
KLF4
M10219_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GKLF_Q3 		0.784 0.812
KLF4
M10220_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GKLF_Q4 		0.784 0.812
KLF4
M04464_2.00 		Homo sapiens
NVCCMCRCCCN
NGGGYGKGGBN		 SELEX
Yin et al.(2017)
KLF4_eDBD_Methyl-HT-SELEX 		0.784 0.812
KLF6
M04400_2.00 		Homo sapiens
NVMCACRCCCH
DGGGYGTGKBN		 SELEX
Yin et al.(2017)
KLF6_eDBD_HT-SELEX 		0.781 0.812
KLF6
M08857_2.00 		Homo sapiens
BYBYVNBCYMCDCCCYBBN
NVVRGGGHGKRGVNBRVRV		 Misc
Kulakovskiy et al.(2013)
KLF6_HUMAN.H11MO.0.A 		0.781 0.812
Klf6
M08962_2.00 		Mus musculus
BYBYVNBCYMCDCCCYBBN
NVVRGGGHGKRGVNBRVRV		 Misc
Kulakovskiy et al.(2013)
KLF6_MOUSE.H11MO.0.B 		0.781 0.812
KLF6
M10113_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CPBP_Q6 		0.781 0.812
KLF6
M04401_2.00 		Homo sapiens
NRCCACGCCCH
DGGGCGTGGYN		 SELEX
Yin et al.(2017)
KLF6_eDBD_Methyl-HT-SELEX 		0.781 0.812
luna
M03704_2.00 		Drosophila melanogaster
RCCACRCCCH
DGGGYGTGGY		 SELEX
Nitta et al.(2015)
luna_1 		0.781 0.797
KLF2
M04455_2.00 		Homo sapiens
NVCCMCRCCCH
DGGGYGKGGBN		 SELEX
Yin et al.(2017)
KLF2_eDBD_HT-SELEX 		0.781 0.797
luna
M06163_2.00 		Drosophila melanogaster
RRMHMCRCCC
GGGYGKDKYY		 B1H
Zhu et al.(2011)
luna_SANGER_5_FBgn0040765 		0.781 0.797
luna
M06164_2.00 		Drosophila melanogaster
DRCCMCGCCCHNNN
NNNDGGGCGKGGYH		 B1H
Zhu et al.(2011)
luna_SOLEXA_5_FBgn0040765 		0.781 0.797
KLF2
M10210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LKLF_Q3 		0.781 0.797
KLF2
M10211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LKLF_Q6 		0.781 0.797
KLF2
M04456_2.00 		Homo sapiens
NVCCMCRCCCN
NGGGYGKGGBN		 SELEX
Yin et al.(2017)
KLF2_eDBD_Methyl-HT-SELEX 		0.781 0.797
KLF1
M00226_2.00 		Homo sapiens
CMCGCCCM
KGGGCGKG		 PBM
Barrera et al.(2016)
KLF1_REF 		0.765 0.768
Klf1
M08099_2.00 		Mus musculus
NRCCACACCCW
WGGGTGTGGYN		 ChIP-seq
Mathelier et al.(2014)
MA0493.1 		0.765 0.768
KLF1
M08293_2.00 		Homo sapiens
NVNNNRCCMCRCCCH
DGGGYGKGGYNNNBN		 ChIP-seq
Schmitges et al.(2016)
Q13351.MEME 		0.765 0.768
KLF1
M08871_2.00 		Homo sapiens
SVNDGCCMCRCCCH
DGGGYGKGGCHNBS		 Misc
Kulakovskiy et al.(2013)
KLF1_HUMAN.H11MO.0.A 		0.765 0.768
Klf1
M09008_2.00 		Mus musculus
MVMNSCCMCRCCCH
DGGGYGKGGSNKBK		 Misc
Kulakovskiy et al.(2013)
KLF1_MOUSE.H11MO.0.A 		0.765 0.768
Klf1
M09516_2.00 		Mus musculus
DRCCACACCCWN
NWGGGTGTGGYH		 Misc
Heinz et al.(2010)
Erythrocyte-Klf1_GSE20478 		0.765 0.768
KLF1
M10163_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EKLF_Q5_01 		0.765 0.768
KLF1
M10164_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EKLF_Q5 		0.765 0.768
KLF1
M00224_2.00 		Homo sapiens
YMCGCCCH
DGGGCGKR		 PBM
Barrera et al.(2016)
KLF1_H299Y 		0.765 0.754
Klf8
M00779_2.00 		Mus musculus
NNNMCRCCYN
NRGGYGKNNN		 PBM
Weirauch et al.(2013)
pTH3086 		0.762 0.841
KLF8
M08867_2.00 		Homo sapiens
CACMCMCKG
CMGKGKGTG		 Misc
Kulakovskiy et al.(2013)
KLF8_HUMAN.H11MO.0.C 		0.762 0.841
Klf8
M09000_2.00 		Mus musculus
CACMCMCKG
CMGKGKGTG		 Misc
Kulakovskiy et al.(2013)
KLF8_MOUSE.H11MO.0.C 		0.762 0.841
KLF8
M10147_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$KLF8_Q5_01 		0.762 0.841
KLF8
M10148_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$KLF8_Q5 		0.762 0.841
dar1
M06171_2.00 		Drosophila melanogaster
RMCACACCCWH
DWGGGTGTGKY		 B1H
Zhu et al.(2011)
CG12029_SANGER_10_FBgn0035454 		0.758 0.783
dar1
M06172_2.00 		Drosophila melanogaster
NNNRCCACRCCCHNN
NNDGGGYGTGGYNNN		 B1H
Zhu et al.(2011)
CG12029_SOLEXA_5_FBgn0035454 		0.758 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000003198 C2H2 ZF 261 285
ENSTRUP00000003198 C2H2 ZF 291 315
ENSTRUP00000003198 C2H2 ZF 321 343
ENSTRUP00000003199 C2H2 ZF 280 304
ENSTRUP00000003199 C2H2 ZF 310 334
ENSTRUP00000003199 C2H2 ZF 340 362
ENSTRUP00000003200 C2H2 ZF 216 240
ENSTRUP00000003200 C2H2 ZF 246 270
ENSTRUP00000003200 C2H2 ZF 276 298

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

734 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R003215 Aptenodytes forsteri Afo_R003215 I
ANCCAN_06536 Ancylostoma caninum ANCCAN_06536 I
ASTEI06455 Anopheles stephensi ASTEI06455 I
CBG07590 Caenorhabditis briggsae CBG07590 I
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I
CRE15310 Caenorhabditis remanei CRE15310 I
csin100403 Clonorchis sinensis csin100403 N
D917_06660 Trichinella nativa D917_06660 I
DME_0000265301 Dracunculus medinensis DME_0000265301 I
EFV50386 Trichinella spiralis EFV50386 I
EmuJ_001076500 Echinococcus multilocularis EmuJ_001076500 N
EBF3 Anolis carolinensis ENSACAG00000008590 I
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I
EBF2 Bos taurus ENSBTAG00000040390 I
EBF2 Canis familiaris ENSCAFG00000008918 I
EBF4 Callithrix jacchus ENSCJAG00000021027 I
EBF2 Cavia porcellus ENSCPOG00000001463 I
ENSCSAG00000010974 Chlorocebus sabaeus ENSCSAG00000010974 I
ebf1b Danio rerio ENSDARG00000069196 I
ebf1a Danio rerio ENSDARG00000099849 I
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I
EBF3 Echinops telfairi ENSETEG00000014060 I
EBF4 Echinops telfairi ENSETEG00000015956 I
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I
EBF3 Homo sapiens ENSG00000108001 D
EBF2 Homo sapiens ENSG00000221818 D
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I
EBF2 Gallus gallus ENSGALG00000000242 I
EBF3 Gallus gallus ENSGALG00000010461 I
EBF2 Gorilla gorilla ENSGGOG00000001585 I
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I
EBF4 Loxodonta africana ENSLAFG00000006892 I
EBF1 Loxodonta africana ENSLAFG00000017522 I
EBF2 Loxodonta africana ENSLAFG00000022465 I
ENSLOCG00000007615 Lepisosteus oculatus ENSLOCG00000007615 I
EBF2 Meleagris gallopavo ENSMGAG00000000791 I
EBF2 Myotis lucifugus ENSMLUG00000011509 I
EBF3 Macaca mulatta ENSMMUG00000011447 I
EBF4 Macaca mulatta ENSMMUG00000021331 I
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I
Ebf3 Mus musculus ENSMUSG00000010476 I
Ebf4 Mus musculus ENSMUSG00000053552 D
ENSNLEG00000009110 Nomascus leucogenys ENSNLEG00000009110 I
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I
EBF3 Otolemur garnettii ENSOGAG00000007572 I
EBF2 Otolemur garnettii ENSOGAG00000010783 I
ENSONIG00000000451 Oreochromis niloticus ENSONIG00000000451 I
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I
EBF1 Oryzias latipes ENSORLG00000002342 I
ebf3a Oryzias latipes ENSORLG00000005870 I
EBF1 Oryzias latipes ENSORLG00000007471 I
EBF4 Oryzias latipes ENSORLG00000020414 I
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I
ENSP00000405003 Macaca fascicularis ENSP00000405003 I
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I
ENSPFOG00000000294 Poecilia formosa ENSPFOG00000000294 I
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I
ENSPFOG00000007531 Poecilia formosa ENSPFOG00000007531 I
ENSPFOG00000017183 Poecilia formosa ENSPFOG00000017183 I
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I
EBF2 Pan troglodytes ENSPTRG00000003058 I
EBF4 Pteropus vampyrus ENSPVAG00000006830 I
Ebf2 Rattus norvegicus ENSRNOG00000011548 I
Ebf3 Rattus norvegicus ENSRNOG00000016102 I
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I
EBF2 Sus scrofa ENSSSCG00000009655 I
EBF1 Tupaia belangeri ENSTBEG00000007800 I
EBF1 Taeniopygia guttata ENSTGUG00000000593 I
EBF2 Taeniopygia guttata ENSTGUG00000004267 I
EBF3 Taeniopygia guttata ENSTGUG00000011600 I
ebf2 Tetraodon nigroviridis ENSTNIG00000015845 I
EBF1 Tetraodon nigroviridis ENSTNIG00000016148 I
ebf2 Takifugu rubripes ENSTRUG00000011528 I
EBF4 Tursiops truncatus ENSTTRG00000003459 I
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I
ENSXMAG00000012715 Xiphophorus maculatus ENSXMAG00000012715 I
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I
GF11778 Drosophila ananassae FBgn0088818 I
GL10656 Drosophila persimilis FBgn0148266 I
GJ21945 Drosophila virilis FBgn0209060 I
GK23295 Drosophila willistoni FBgn0225257 I
GA24435 Drosophila pseudoobscura FBgn0245832 I
GPLIN_000159400 Globodera pallida GPLIN_000159400 I
HelroG112029 Helobdella robusta HelroG112029 I
HelroG143625 Helobdella robusta HelroG143625 I
KGM_09934 Danaus plexippus KGM_09934 I
L889_g1820 Steinernema feltiae L889_g1820 I
L893_g31120 Steinernema glaseri L893_g31120 I
L898_g8304 Steinernema monticolum L898_g8304 I
LOAG_18199 Loa loa LOAG_18199 I
LotgiG225788 Lottia gigantea LotgiG225788 I
maker-nMf.1.1.scaf01942-snap-gene-0.10 Meloidogyne floridensis maker-nMf.1.1.scaf01942-snap-gene-0.10 I
MDOA011385 Musca domestica MDOA011385 I
nDi.2.2.2.g04990 Dirofilaria immitis nDi.2.2.2.g04990 I
NECAME_10162 Necator americanus NECAME_10162 I
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I
SINV26263 Solenopsis invicta SINV26263 I
Sjc_0015600 Schistosoma japonicum Sjc_0015600 I
SMU15024001 Schmidtea mediterranea SMU15024001 I
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I
SVUK_0001114801 Strongylus vulgaris SVUK_0001114801 I
T265_13606 Opisthorchis viverrini T265_13606 N
TRE_0001373801 Trichobilharzia regenti TRE_0001373801 I
TTAC_0000009401 Hydatigera taeniaeformis TTAC_0000009401 I
TTRE_0000372001 Trichuris trichiura TTRE_0000372001 I
WUBG_00630 Wuchereria bancrofti WUBG_00630 I
ebf4 Xenopus tropicalis XB-GENE-6030626 I
ebf2 Xenopus tropicalis XB-GENE-971136 I
ebf2.S Xenopus laevis XB-GENE-971141 I