POPTR_0002s12010 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0002s12010 T126791_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.821 0.891
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.802 0.848
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.800 0.739
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.800 0.717
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.795 0.804
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.795 0.804
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.795 0.804
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.786 0.761
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.786 0.761
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.775 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s12010.1 C2H2 ZF 93 115
POPTR_0002s12010.1 C2H2 ZF 147 169

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013478 Ailuropoda melanoleuca ENSAMEG00000013478 I
SNAI1 Bos taurus ENSBTAG00000014554 I
ENSBTAP00000019345-D1 Bos grunniens ENSBTAP00000019345-D1 I
SNAI1 Canis familiaris ENSCAFG00000011499 I
SNAI1 Callithrix jacchus ENSCJAG00000000518 I
SNAI1 Cavia porcellus ENSCPOG00000026663 I
ENSCSAG00000015065 Chlorocebus sabaeus ENSCSAG00000015065 I
snai1a Danio rerio ENSDARG00000056995 I
SNAI1 Dasypus novemcinctus ENSDNOG00000023834 I
ENSDNOG00000024891 Dasypus novemcinctus ENSDNOG00000024891 I
SNAI1 Equus caballus ENSECAG00000009787 I
ENSETEG00000016371 Echinops telfairi ENSETEG00000016371 I
SNAI1 Felis catus ENSFCAG00000010558 I
SNAI1 Homo sapiens ENSG00000124216 D
snai1a Gasterosteus aculeatus ENSGACG00000010147 I
SNAI1 Gorilla gorilla ENSGGOG00000024422 I
ENSGMOG00000017815 Gadus morhua ENSGMOG00000017815 I
SNAI1 Loxodonta africana ENSLAFG00000030265 I
ENSMICG00000011160 Microcebus murinus ENSMICG00000011160 I
ENSMLUG00000015053 Myotis lucifugus ENSMLUG00000015053 I
ENSMMUG00000019719 Macaca mulatta ENSMMUG00000019719 I
ENSMPUG00000017558 Mustela putorius furo ENSMPUG00000017558 I
Snai1 Mus musculus ENSMUSG00000042821 D
ENSNLEG00000006985 Nomascus leucogenys ENSNLEG00000006985 I
ENSOARG00000013174 Ovis aries ENSOARG00000013174 I
SNAI1 Oryctolagus cuniculus ENSOCUG00000005422 I
SNAI1 Otolemur garnettii ENSOGAG00000030111 I
ENSONIG00000020305 Oreochromis niloticus ENSONIG00000020305 I
ENSPANG00000007536 Papio anubis ENSPANG00000007536 I
SNAI1 Procavia capensis ENSPCAG00000011934 I
ENSPFOG00000015709 Poecilia formosa ENSPFOG00000015709 I
SNAI1 Pan troglodytes ENSPTRG00000013614 I
SNAI1 Pteropus vampyrus ENSPVAG00000004119 I
Snai1 Rattus norvegicus ENSRNOG00000009594 I
ENSSTOG00000005866 Ictidomys tridecemlineatus ENSSTOG00000005866 I
SNAI1 Tupaia belangeri ENSTBEG00000012262 I
ENSTNIG00000004434 Tetraodon nigroviridis ENSTNIG00000004434 I
snai1a Tetraodon nigroviridis ENSTNIG00000007311 I
snai3 Takifugu rubripes ENSTRUG00000002385 I
snai1a Takifugu rubripes ENSTRUG00000012293 I
SNAI1 Tursiops truncatus ENSTTRG00000002029 I
ENSXMAG00000009637 Xiphophorus maculatus ENSXMAG00000009637 I
GM16048 Drosophila sechellia FBgn0170964 I
Myotis_brandtii_SNAI1_10026379 Myotis brandtii Myotis_brandtii_SNAI1_10026379 I
snai3 Xenopus tropicalis XB-GENE-488030 I