snai1a (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000007311 T112009_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.779 0.857
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.779 0.857
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.779 0.846
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.779 0.846
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.779 0.846
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.779 0.846
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.779 0.846
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.779 0.846
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.779 0.846
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.779 0.846
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000001657 C2H2 ZF 153 175
ENSTNIP00000001657 C2H2 ZF 179 201
ENSTNIP00000001657 C2H2 ZF 207 229
ENSTNIP00000001657 C2H2 ZF 235 256
ENSTNIP00000010115 C2H2 ZF 148 170
ENSTNIP00000010115 C2H2 ZF 174 196
ENSTNIP00000010115 C2H2 ZF 202 224
ENSTNIP00000010115 C2H2 ZF 230 251

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
snai1a Takifugu rubripes ENSTRUG00000012293 I 0.827
snai1a Gasterosteus aculeatus ENSGACG00000010147 I 0.824
ENSGMOG00000017815 Gadus morhua ENSGMOG00000017815 I 0.824
ENSPFOG00000015709 Poecilia formosa ENSPFOG00000015709 I 0.824
ENSXMAG00000009637 Xiphophorus maculatus ENSXMAG00000009637 I 0.824
ENSONIG00000020305 Oreochromis niloticus ENSONIG00000020305 I 0.822
snai1a Danio rerio ENSDARG00000056995 I 0.797
snai3 Xenopus tropicalis XB-GENE-488030 I 0.797
SNAI1 Bos taurus ENSBTAG00000014554 I 0.779
SNAI1 Callithrix jacchus ENSCJAG00000000518 I 0.779
ENSCSAG00000015065 Chlorocebus sabaeus ENSCSAG00000015065 I 0.779
SNAI1 Homo sapiens ENSG00000124216 D 0.779
SNAI1 Gorilla gorilla ENSGGOG00000024422 I 0.779
ENSMICG00000011160 Microcebus murinus ENSMICG00000011160 I 0.779
ENSMMUG00000019719 Macaca mulatta ENSMMUG00000019719 I 0.779
Snai1 Mus musculus ENSMUSG00000042821 D 0.779
ENSNLEG00000006985 Nomascus leucogenys ENSNLEG00000006985 I 0.779
ENSOARG00000013174 Ovis aries ENSOARG00000013174 I 0.779
SNAI1 Otolemur garnettii ENSOGAG00000030111 I 0.779
ENSPANG00000007536 Papio anubis ENSPANG00000007536 I 0.779
SNAI1 Pan troglodytes ENSPTRG00000013614 I 0.779
SNAI1 Pteropus vampyrus ENSPVAG00000004119 I 0.779
Snai1 Rattus norvegicus ENSRNOG00000009594 I 0.779
ENSSTOG00000005866 Ictidomys tridecemlineatus ENSSTOG00000005866 I 0.779
SNAI1 Tursiops truncatus ENSTTRG00000002029 I 0.779
ENSBTAP00000019345-D1 Bos grunniens ENSBTAP00000019345-D1 I 0.779
ENSAMEG00000013478 Ailuropoda melanoleuca ENSAMEG00000013478 I 0.777
SNAI1 Canis familiaris ENSCAFG00000011499 I 0.777
SNAI1 Cavia porcellus ENSCPOG00000026663 I 0.777
SNAI1 Dasypus novemcinctus ENSDNOG00000023834 I 0.777
SNAI1 Felis catus ENSFCAG00000010558 I 0.777
SNAI1 Loxodonta africana ENSLAFG00000030265 I 0.777
ENSMLUG00000015053 Myotis lucifugus ENSMLUG00000015053 I 0.777
ENSMPUG00000017558 Mustela putorius furo ENSMPUG00000017558 I 0.777
SNAI1 Procavia capensis ENSPCAG00000011934 I 0.777
SNAI1 Tupaia belangeri ENSTBEG00000012262 I 0.777
ENSETEG00000016371 Echinops telfairi ENSETEG00000016371 I 0.776
Myotis_brandtii_SNAI1_10026379 Myotis brandtii Myotis_brandtii_SNAI1_10026379 I 0.776
Myotis_brandtii_SNAI1_10026057 Myotis brandtii Myotis_brandtii_SNAI1_10026057 I 0.775
ENSDNOG00000024891 Dasypus novemcinctus ENSDNOG00000024891 I 0.770
SNAI1 Equus caballus ENSECAG00000009787 I 0.760
SNAI1 Oryctolagus cuniculus ENSOCUG00000005422 I 0.757