Solyc11g073060.1 (Solanum lycopersicum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Solyc11g073060.1 T129397_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.775 0.739
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.775 0.739
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.767 0.761
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.762 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.761 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.761 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc11g073060.1.1 C2H2 ZF 36 58
Solyc11g073060.1.1 C2H2 ZF 75 97

Links

Other C2H2 ZF family TFs
Other Solanum lycopersicum TFs

367 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000008501 Angiostrongylus cantonensis ACAC_0000008501 N
D918_02299 Trichuris suis D918_02299 N
D918_05744 Trichuris suis D918_05744 N
EFV54566 Trichinella spiralis EFV54566 N
GPUH_0000076201 Gongylonema pulchrum GPUH_0000076201 N
nAv.1.0.1.g04294 Acanthocheilonema viteae nAv.1.0.1.g04294 N
NBR_0001111401 Nippostrongylus brasiliensis NBR_0001111401 I
nDi.2.2.2.g12300 Dirofilaria immitis nDi.2.2.2.g12300 I
nLs.2.1.2.g09328 Litomosoides sigmodontis nLs.2.1.2.g09328 N
nOo.2.0.1.g11935 Onchocerca ochengi nOo.2.0.1.g11935 N
OESDEN_24323 Oesophagostomum dentatum OESDEN_24323 N
PEQ_0000501101 Parascaris equorum PEQ_0000501101 N
PPA28053 Pristionchus pacificus PPA28053 N
TCNE_0000897001 Toxocara canis TCNE_0000897001 N
TMUE_s0024003700 Trichuris muris TMUE_s0024003700 N
TMUE_s0040003800 Trichuris muris TMUE_s0040003800 N
TTRE_0000375101 Trichuris trichiura TTRE_0000375101 N
WBGene00238278 Onchocerca volvulus WBGene00238278 N