scrt-1 (Caenorhabditis elegans)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 WBGene00016948 T131623_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
C55C2.1_CONSTRUCT
M00649_2.00 		PBM CONSTRUCTS
NHYDHHNNN
NNNDDHRDN		 PBM
Narasimhan et al.(2015)
pTH10623 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
C55C2.1 C2H2 ZF 94 116
C55C2.1 C2H2 ZF 122 144
C55C2.1 C2H2 ZF 150 171

Links

Other C2H2 ZF family TFs
Other Caenorhabditis elegans TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava2753.m1 Manihot esculenta cassava2753.m1 N
cassava34800.m1 Manihot esculenta cassava34800.m1 N
gene25548-v1.0-hybrid Fragaria vesca gene25548-v1.0-hybrid N
Gorai.011G058900 Gossypium raimondii Gorai.011G058900 N
mgf000450m Mimulus guttatus mgf000450m N
orange1.1g008559m.g Citrus sinensis orange1.1g008559m.g N
PGSC0003DMG400039263 Solanum tuberosum PGSC0003DMG400039263 N
PK20670.1 Cannabis sativa PK20670.1 N
Pm013263 Prunus mume Pm013263 N
POPTR_0001s16890 Populus trichocarpa POPTR_0001s16890 N
POPTR_0003s06380 Populus trichocarpa POPTR_0003s06380 N
PRUPE_ppa022653mg Prunus persica PRUPE_ppa022653mg N
SapurV1A.0002s0940 Salix purpurea SapurV1A.0002s0940 N
TCM_029136 Theobroma cacao TCM_029136 N
VIT_09s0002g01190 Vitis vinifera VIT_09s0002g01190 N