Cla005913 (Citrullus lanatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cla005913 T133933_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.777 0.864
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.777 0.864
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla005913 C2H2 ZF 139 160
Cla005913 C2H2 ZF 159 186

Links

Other C2H2 ZF family TFs
Other Citrullus lanatus TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001830 Calypte anna Aan_R001830 N
Afo_R015384 Aptenodytes forsteri Afo_R015384 N
Alligator_sinensis_CCG000560.1 Alligator sinensis Alligator_sinensis_CCG000560.1 N
MXD4 Anolis carolinensis ENSACAG00000007819 N
ENSAMEG00000014340 Ailuropoda melanoleuca ENSAMEG00000014340 N
ENSAPLG00000004997 Anas platyrhynchos ENSAPLG00000004997 N
MXD4 Bos taurus ENSBTAG00000015209 N
MXD4 Canis familiaris ENSCAFG00000014873 N
MXD4 Callithrix jacchus ENSCJAG00000014432 N
MXD4 Cavia porcellus ENSCPOG00000022492 N
ENSCSAG00000015741 Chlorocebus sabaeus ENSCSAG00000015741 N
mxd1 Danio rerio ENSDARG00000032039 N
mxd4 Danio rerio ENSDARG00000054031 N
MXD4 Equus caballus ENSECAG00000002580 N
MXD4 Echinops telfairi ENSETEG00000005547 N
ENSFALG00000009868 Ficedula albicollis ENSFALG00000009868 N
MXD4 Felis catus ENSFCAG00000012927 N
MXD4 Homo sapiens ENSG00000123933 N
mxd1 Gasterosteus aculeatus ENSGACG00000013215 I
mxd4 Gasterosteus aculeatus ENSGACG00000017587 N
MXD4 Gorilla gorilla ENSGGOG00000000747 N
ENSLACG00000006663 Latimeria chalumnae ENSLACG00000006663 N
MXD4 Loxodonta africana ENSLAFG00000026709 N
ENSLOCG00000002303 Lepisosteus oculatus ENSLOCG00000002303 N
ENSLOCG00000015320 Lepisosteus oculatus ENSLOCG00000015320 I
ENSMEUG00000013427 Macropus eugenii ENSMEUG00000013427 N
MXD4 Meleagris gallopavo ENSMGAG00000013027 N
ENSMMUG00000001160 Macaca mulatta ENSMMUG00000001160 N
MXD4 Monodelphis domestica ENSMODG00000004033 N
ENSMPUG00000010989 Mustela putorius furo ENSMPUG00000010989 N
Mxd4 Mus musculus ENSMUSG00000037235 N
MXD4 Oryctolagus cuniculus ENSOCUG00000005063 N
MXD4 Otolemur garnettii ENSOGAG00000011305 N
ENSONIG00000015871 Oreochromis niloticus ENSONIG00000015871 I
ENSONIG00000017548 Oreochromis niloticus ENSONIG00000017548 N
mxd4 Oryzias latipes ENSORLG00000006439 N
mxd1 Oryzias latipes ENSORLG00000015461 I
ENSP00000337889 Macaca fascicularis ENSP00000337889 N
ENSPANG00000024535 Papio anubis ENSPANG00000024535 N
MXD4 Procavia capensis ENSPCAG00000014133 N
ENSPFOG00000004367 Poecilia formosa ENSPFOG00000004367 I
ENSPFOG00000011915 Poecilia formosa ENSPFOG00000011915 N
ENSPPYG00000014540 Pongo abelii ENSPPYG00000014540 N
ENSPSIG00000016320 Pelodiscus sinensis ENSPSIG00000016320 N
MXD4 Pan troglodytes ENSPTRG00000015844 N
MXD4 Pteropus vampyrus ENSPVAG00000011169 N
Mxd4 Rattus norvegicus ENSRNOG00000015033 N
ENSSHAG00000011878 Sarcophilus harrisii ENSSHAG00000011878 N
MXD4 Sus scrofa ENSSSCG00000008687 N
ENSSTOG00000028770 Ictidomys tridecemlineatus ENSSTOG00000028770 N
MXD4 Taeniopygia guttata ENSTGUG00000010530 N
mxd1 Tetraodon nigroviridis ENSTNIG00000000414 I
mxd4 Tetraodon nigroviridis ENSTNIG00000018042 N
mxd4 Takifugu rubripes ENSTRUG00000003046 N
MXD4 Tursiops truncatus ENSTTRG00000013740 N
ENSXMAG00000004566 Xiphophorus maculatus ENSXMAG00000004566 I
ENSXMAG00000005473 Xiphophorus maculatus ENSXMAG00000005473 N
Gfo_R003202 Geospiza fortis Gfo_R003202 N
Ogr18275 Ophisaurus gracilis Ogr18275 N
Pvit_14853 Pogona vitticeps Pvit_14853 N
Tal_R007717 Tyto alba Tal_R007717 N
mxd4.L Xenopus laevis XB-GENE-6252709 N
mxd4.S Xenopus laevis XB-GENE-6256011 N
mxd4 Xenopus tropicalis XB-GENE-6257573 N
mxd1 Xenopus tropicalis XB-GENE-943715 N
mxd1.L Xenopus laevis XB-GENE-943720 N