Cla005913 (Citrullus lanatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cla005913 T133933_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.777 0.864
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.777 0.864
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla005913 C2H2 ZF 139 160
Cla005913 C2H2 ZF 159 186

Links

Other C2H2 ZF family TFs
Other Citrullus lanatus TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK17145.1 Cannabis sativa PK17145.1 I 0.806
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.797
Pm005926 Prunus mume Pm005926 I 0.797
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.797
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.797
BGIOSGA030871 Oryza indica BGIOSGA030871 I 0.792
BRADI4G31770 Brachypodium distachyon BRADI4G31770 I 0.792
GRMZM2G123094 Zea mays GRMZM2G123094 I 0.792
GRMZM2G141031 Zea mays GRMZM2G141031 I 0.792
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.792
LPERR09G08790 Leersia perrieri LPERR09G08790 I 0.792
MLOC_57613 Hordeum vulgare MLOC_57613 I 0.792
OBART09G12250 Oryza barthii OBART09G12250 I 0.792
OGLUM09G12720 Oryza glumaepatula OGLUM09G12720 I 0.792
OMERI09G13410 Oryza meridionalis OMERI09G13410 I 0.792
ONIVA09G13010 Oryza nivara ONIVA09G13010 I 0.792
OPUNC09G10740 Oryza punctata OPUNC09G10740 I 0.792
ORGLA09G0092400 Oryza glaberrima ORGLA09G0092400 I 0.792
ORUFI09G13180 Oryza rufipogon ORUFI09G13180 I 0.792
Sb02g026230 Sorghum bicolor Sb02g026230 I 0.792
Sb07g022700 Sorghum bicolor Sb07g022700 I 0.792
Si029726m.g Setaria italica Si029726m.g I 0.792
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.792
Pavir.Ba02057 Panicum virgatum Pavir.Ba02057 I 0.792
Pavir.Fa00691 Panicum virgatum Pavir.Fa00691 I 0.792
Pavir.Fb01741 Panicum virgatum Pavir.Fb01741 I 0.792
Pavir.J40191 Panicum virgatum Pavir.J40191 I 0.792
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.792
Bo5g043540 Brassica oleracea Bo5g043540 I 0.791
Bra024771 Brassica rapa Bra024771 I 0.791
GLYMA05G26780 Glycine max GLYMA05G26780 I 0.788
GLYMA08G09760 Glycine max GLYMA08G09760 I 0.788
GSMUA_Achr10G29940_001 Musa acuminata GSMUA_Achr10G29940_001 I 0.788
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I 0.788
Ca_05083 Cicer arietinum Ca_05083 I 0.788
Pm025274 Prunus mume Pm025274 I 0.788
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I 0.788
Gorai.005G134600 Gossypium raimondii Gorai.005G134600 I 0.788
Gorai.009G329200 Gossypium raimondii Gorai.009G329200 I 0.788
Lus10026369.g Linum usitatissimum Lus10026369.g I 0.788
Lus10031314.g Linum usitatissimum Lus10031314.g I 0.788
Lus10031882.g Linum usitatissimum Lus10031882.g I 0.788
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I 0.788
PK25720.1 Cannabis sativa PK25720.1 I 0.788
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.786
Bo3g139880 Brassica oleracea Bo3g139880 I 0.786
Bra010981 Brassica rapa Bra010981 I 0.786
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.786
OB09G18760 Oryza brachyantha OB09G18760 I 0.786
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.786
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.786
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.786
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.786
Bra024841 Brassica rapa Bra024841 I 0.783
PGSC0003DMG400026959 Solanum tuberosum PGSC0003DMG400026959 I 0.783
PGSC0003DMG400031049 Solanum tuberosum PGSC0003DMG400031049 I 0.783
POPTR_0008s13980 Populus trichocarpa POPTR_0008s13980 I 0.783
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I 0.783
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I 0.783
POPTR_0015s05180 Populus trichocarpa POPTR_0015s05180 I 0.783
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I 0.783
TCM_011210 Theobroma cacao TCM_011210 I 0.783
TCM_039880 Theobroma cacao TCM_039880 I 0.783
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I 0.783
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I 0.783
Cla018945 Citrullus lanatus Cla018945 I 0.783
28952.m000016 Ricinus communis 28952.m000016 I 0.783
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I 0.783
cassava36596.valid.m1 Manihot esculenta cassava36596.valid.m1 I 0.783
Cucsa.112090 Cucumis sativus Cucsa.112090 I 0.783
Cucsa.122150 Cucumis sativus Cucsa.122150 I 0.783
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I 0.783
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I 0.783
evm.TU.supercontig_2.118 Carica papaya evm.TU.supercontig_2.118 I 0.783
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I 0.783
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I 0.783
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I 0.783
Gorai.006G190500 Gossypium raimondii Gorai.006G190500 I 0.783
Gorai.007G002600 Gossypium raimondii Gorai.007G002600 I 0.783
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I 0.783
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I 0.783
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I 0.783
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I 0.783
BRADI3G37890 Brachypodium distachyon BRADI3G37890 I 0.782
GRMZM2G110107 Zea mays GRMZM2G110107 I 0.782
LPERR08G14510 Leersia perrieri LPERR08G14510 I 0.782
OBART08G17550 Oryza barthii OBART08G17550 I 0.782
OGLUM08G18370 Oryza glumaepatula OGLUM08G18370 I 0.782
OMERI08G14120 Oryza meridionalis OMERI08G14120 I 0.782
ONIVA08G19430 Oryza nivara ONIVA08G19430 I 0.782
OPUNC08G15410 Oryza punctata OPUNC08G15410 I 0.782
ORGLA08G0153600 Oryza glaberrima ORGLA08G0153600 I 0.782
ORGLA09G0169200 Oryza glaberrima ORGLA09G0169200 I 0.782
OS08G0467100 Oryza sativa OS08G0467100 I 0.782
Gorai.008G169500 Gossypium raimondii Gorai.008G169500 I 0.778
SGR5 Arabidopsis thaliana AT2G01940 D 0.777
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.777
Bo2g134790 Brassica oleracea Bo2g134790 I 0.777
Bo9g070370 Brassica oleracea Bo9g070370 I 0.777
Bra017432 Brassica rapa Bra017432 I 0.777
Bra026624 Brassica rapa Bra026624 I 0.777
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.777
F775_43255 Aegilops tauschii F775_43255 I 0.777
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.777
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.777
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.777
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.777
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.777
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.777
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.777
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.777
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.777
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.777
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.777
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.777
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.777
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.777
OS03G0237250 Oryza sativa OS03G0237250 I 0.777
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.777
Ca_22171 Cicer arietinum Ca_22171 I 0.777
mgf008235m Mimulus guttatus mgf008235m I 0.777
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.777
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.777
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.777
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.777
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.777
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.777
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.777
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.777
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I 0.774
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I 0.768
Solyc01g005060.2 Solanum lycopersicum Solyc01g005060.2 I 0.764
IDD14 Arabidopsis thaliana AT1G68130 I 0.762
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I 0.759