Pavir.Ba02057 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ba02057 T143315_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.759 0.864
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.759 0.864
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba02057.1.p C2H2 ZF 144 171
Pavir.Ba02057.1.p C2H2 ZF 165 191

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA030871 Oryza indica BGIOSGA030871 I 0.827
BRADI4G31770 Brachypodium distachyon BRADI4G31770 I 0.827
GRMZM2G123094 Zea mays GRMZM2G123094 I 0.827
GRMZM2G141031 Zea mays GRMZM2G141031 I 0.827
LPERR09G08790 Leersia perrieri LPERR09G08790 I 0.827
OBART09G12250 Oryza barthii OBART09G12250 I 0.827
OGLUM09G12720 Oryza glumaepatula OGLUM09G12720 I 0.827
OMERI09G13410 Oryza meridionalis OMERI09G13410 I 0.827
ONIVA09G13010 Oryza nivara ONIVA09G13010 I 0.827
OPUNC09G10740 Oryza punctata OPUNC09G10740 I 0.827
ORGLA09G0092400 Oryza glaberrima ORGLA09G0092400 I 0.827
ORUFI09G13180 Oryza rufipogon ORUFI09G13180 I 0.827
Sb02g026230 Sorghum bicolor Sb02g026230 I 0.827
Sb07g022700 Sorghum bicolor Sb07g022700 I 0.827
Si029726m.g Setaria italica Si029726m.g I 0.827
Pavir.Fa00691 Panicum virgatum Pavir.Fa00691 I 0.827
Pavir.Fb01741 Panicum virgatum Pavir.Fb01741 I 0.827
Pavir.J40191 Panicum virgatum Pavir.J40191 I 0.827
MLOC_57613 Hordeum vulgare MLOC_57613 I 0.822
BRADI3G37890 Brachypodium distachyon BRADI3G37890 I 0.818
GRMZM2G110107 Zea mays GRMZM2G110107 I 0.818
LPERR08G14510 Leersia perrieri LPERR08G14510 I 0.812
OBART08G17550 Oryza barthii OBART08G17550 I 0.812
OGLUM08G18370 Oryza glumaepatula OGLUM08G18370 I 0.812
OMERI08G14120 Oryza meridionalis OMERI08G14120 I 0.812
ONIVA08G19430 Oryza nivara ONIVA08G19430 I 0.812
OPUNC08G15410 Oryza punctata OPUNC08G15410 I 0.812
ORGLA08G0153600 Oryza glaberrima ORGLA08G0153600 I 0.812
ORGLA09G0169200 Oryza glaberrima ORGLA09G0169200 I 0.812
OS08G0467100 Oryza sativa OS08G0467100 I 0.812
Cla005913 Citrullus lanatus Cla005913 I 0.792
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I 0.791
PK17145.1 Cannabis sativa PK17145.1 I 0.788
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.774
OB09G18760 Oryza brachyantha OB09G18760 I 0.774
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.768
IDD14 Arabidopsis thaliana AT1G68130 I 0.768
Bo3g139880 Brassica oleracea Bo3g139880 I 0.768
Bo5g043540 Brassica oleracea Bo5g043540 I 0.768
Bra010981 Brassica rapa Bra010981 I 0.768
Bra024771 Brassica rapa Bra024771 I 0.768
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.768
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.768
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.768
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.768
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.767
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.764
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.764
F775_43255 Aegilops tauschii F775_43255 I 0.764
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.764
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.764
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.764
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.764
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.764
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.764
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.764
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.764
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.764
OS03G0237250 Oryza sativa OS03G0237250 I 0.764
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.764
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.764
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I 0.762
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.762
Pm005926 Prunus mume Pm005926 I 0.762
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.762
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.762
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.762
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.762
SGR5 Arabidopsis thaliana AT2G01940 D 0.759
Bo2g134790 Brassica oleracea Bo2g134790 I 0.759
Bo6g097320 Brassica oleracea Bo6g097320 I 0.759
Bo6g106560 Brassica oleracea Bo6g106560 I 0.759
Bo9g070370 Brassica oleracea Bo9g070370 I 0.759
Bra004050 Brassica rapa Bra004050 I 0.759
Bra004283 Brassica rapa Bra004283 I 0.759
Bra017432 Brassica rapa Bra017432 I 0.759
Bra026624 Brassica rapa Bra026624 I 0.759
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I 0.759
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.759
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.759
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.759
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.759
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.759
Ca_22171 Cicer arietinum Ca_22171 I 0.759
mgf008235m Mimulus guttatus mgf008235m I 0.759
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.759
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I 0.759
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I 0.759
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.759
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.759
Carubv10020337m.g Capsella rubella Carubv10020337m.g I 0.759
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.759
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.759
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.759
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.759
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I 0.759