Carubv10020337m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10020337m.g T142737_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.803 0.977
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.803 0.977
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020337m C2H2 ZF 150 171
Carubv10020337m C2H2 ZF 171 197

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g097320 Brassica oleracea Bo6g097320 I 0.827
Bra004050 Brassica rapa Bra004050 I 0.827
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I 0.827
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I 0.827
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I 0.827
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I 0.827
IDD14 Arabidopsis thaliana AT1G68130 I 0.818
Bo6g106560 Brassica oleracea Bo6g106560 I 0.818
Bra004283 Brassica rapa Bra004283 I 0.818
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I 0.811
Solyc01g005060.2 Solanum lycopersicum Solyc01g005060.2 I 0.806
SGR5 Arabidopsis thaliana AT2G01940 D 0.803
Bo2g134790 Brassica oleracea Bo2g134790 I 0.803
Bo9g070370 Brassica oleracea Bo9g070370 I 0.803
Bra017432 Brassica rapa Bra017432 I 0.803
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.803
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.803
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.803
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.803
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.803
Bra024841 Brassica rapa Bra024841 I 0.797
Cucsa.122150 Cucumis sativus Cucsa.122150 I 0.797
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.794
Bo3g139880 Brassica oleracea Bo3g139880 I 0.794
Bra010981 Brassica rapa Bra010981 I 0.794
Bra026624 Brassica rapa Bra026624 I 0.794
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.794
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.794
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.794
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.794
Ca_22171 Cicer arietinum Ca_22171 I 0.794
mgf008235m Mimulus guttatus mgf008235m I 0.794
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.794
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.794
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.794
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.794
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.794
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.794
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.794
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.788
Bo5g043540 Brassica oleracea Bo5g043540 I 0.788
Bra024771 Brassica rapa Bra024771 I 0.788
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.788
F775_43255 Aegilops tauschii F775_43255 I 0.788
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.788
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.788
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.788
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.788
OB09G18760 Oryza brachyantha OB09G18760 I 0.788
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.788
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.788
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.788
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.788
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.788
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.788
OS03G0237250 Oryza sativa OS03G0237250 I 0.788
PGSC0003DMG400026959 Solanum tuberosum PGSC0003DMG400026959 I 0.788
PGSC0003DMG400031049 Solanum tuberosum PGSC0003DMG400031049 I 0.788
POPTR_0008s13980 Populus trichocarpa POPTR_0008s13980 I 0.788
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I 0.788
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I 0.788
POPTR_0015s05180 Populus trichocarpa POPTR_0015s05180 I 0.788
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I 0.788
TCM_011210 Theobroma cacao TCM_011210 I 0.788
TCM_039880 Theobroma cacao TCM_039880 I 0.788
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.788
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I 0.788
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I 0.788
Cla018945 Citrullus lanatus Cla018945 I 0.788
28952.m000016 Ricinus communis 28952.m000016 I 0.788
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I 0.788
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.788
cassava36596.valid.m1 Manihot esculenta cassava36596.valid.m1 I 0.788
Cucsa.112090 Cucumis sativus Cucsa.112090 I 0.788
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I 0.788
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I 0.788
evm.TU.supercontig_2.118 Carica papaya evm.TU.supercontig_2.118 I 0.788
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I 0.788
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I 0.788
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I 0.788
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I 0.788
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.788
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I 0.788
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.788
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I 0.788
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I 0.782
GLYMA05G26780 Glycine max GLYMA05G26780 I 0.782
GLYMA08G09760 Glycine max GLYMA08G09760 I 0.782
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I 0.782
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.782
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I 0.782
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.782
Ca_05083 Cicer arietinum Ca_05083 I 0.782
Pm005926 Prunus mume Pm005926 I 0.782
Pm025274 Prunus mume Pm025274 I 0.782
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I 0.782
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I 0.782
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.782
Gorai.005G134600 Gossypium raimondii Gorai.005G134600 I 0.782
Gorai.006G190500 Gossypium raimondii Gorai.006G190500 I 0.782
Gorai.007G002600 Gossypium raimondii Gorai.007G002600 I 0.782
Gorai.009G329200 Gossypium raimondii Gorai.009G329200 I 0.782
Lus10026369.g Linum usitatissimum Lus10026369.g I 0.782
Lus10031314.g Linum usitatissimum Lus10031314.g I 0.782
Lus10031882.g Linum usitatissimum Lus10031882.g I 0.782
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I 0.782
PK25720.1 Cannabis sativa PK25720.1 I 0.782
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.782
GSMUA_Achr10G29940_001 Musa acuminata GSMUA_Achr10G29940_001 I 0.773
Gorai.008G169500 Gossypium raimondii Gorai.008G169500 I 0.773
BGIOSGA030871 Oryza indica BGIOSGA030871 I 0.759
BRADI3G37890 Brachypodium distachyon BRADI3G37890 I 0.759
BRADI4G31770 Brachypodium distachyon BRADI4G31770 I 0.759
GRMZM2G110107 Zea mays GRMZM2G110107 I 0.759
GRMZM2G123094 Zea mays GRMZM2G123094 I 0.759
GRMZM2G141031 Zea mays GRMZM2G141031 I 0.759
LPERR08G14510 Leersia perrieri LPERR08G14510 I 0.759
LPERR09G08790 Leersia perrieri LPERR09G08790 I 0.759
MLOC_57613 Hordeum vulgare MLOC_57613 I 0.759
OBART08G17550 Oryza barthii OBART08G17550 I 0.759
OBART09G12250 Oryza barthii OBART09G12250 I 0.759
OGLUM08G18370 Oryza glumaepatula OGLUM08G18370 I 0.759
OGLUM09G12720 Oryza glumaepatula OGLUM09G12720 I 0.759
OMERI08G14120 Oryza meridionalis OMERI08G14120 I 0.759
OMERI09G13410 Oryza meridionalis OMERI09G13410 I 0.759
ONIVA08G19430 Oryza nivara ONIVA08G19430 I 0.759
ONIVA09G13010 Oryza nivara ONIVA09G13010 I 0.759
OPUNC08G15410 Oryza punctata OPUNC08G15410 I 0.759
OPUNC09G10740 Oryza punctata OPUNC09G10740 I 0.759
ORGLA08G0153600 Oryza glaberrima ORGLA08G0153600 I 0.759
ORGLA09G0092400 Oryza glaberrima ORGLA09G0092400 I 0.759
ORGLA09G0169200 Oryza glaberrima ORGLA09G0169200 I 0.759
ORUFI09G13180 Oryza rufipogon ORUFI09G13180 I 0.759
OS08G0467100 Oryza sativa OS08G0467100 I 0.759
Sb02g026230 Sorghum bicolor Sb02g026230 I 0.759
Sb07g022700 Sorghum bicolor Sb07g022700 I 0.759
Si029726m.g Setaria italica Si029726m.g I 0.759
Pavir.Ba02057 Panicum virgatum Pavir.Ba02057 I 0.759
Pavir.Fa00691 Panicum virgatum Pavir.Fa00691 I 0.759
Pavir.Fb01741 Panicum virgatum Pavir.Fb01741 I 0.759
Pavir.J40191 Panicum virgatum Pavir.J40191 I 0.759
PK17145.1 Cannabis sativa PK17145.1 I 0.759