PGSC0003DMG400031049 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400031049 T125847_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.811 0.976
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.811 0.976
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400079735 C2H2 ZF 131 152
PGSC0003DMT400079735 C2H2 ZF 152 177

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0008s13980 Populus trichocarpa POPTR_0008s13980 I 0.827
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I 0.827
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I 0.827
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I 0.827
TCM_011210 Theobroma cacao TCM_011210 I 0.827
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I 0.827
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I 0.827
Cla018945 Citrullus lanatus Cla018945 I 0.827
28952.m000016 Ricinus communis 28952.m000016 I 0.827
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I 0.827
Cucsa.112090 Cucumis sativus Cucsa.112090 I 0.827
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I 0.827
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I 0.827
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I 0.827
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I 0.827
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I 0.827
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I 0.827
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I 0.827
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I 0.827
GLYMA05G26780 Glycine max GLYMA05G26780 I 0.822
GLYMA08G09760 Glycine max GLYMA08G09760 I 0.822
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I 0.822
Ca_05083 Cicer arietinum Ca_05083 I 0.822
Pm025274 Prunus mume Pm025274 I 0.822
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I 0.822
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I 0.822
Lus10031314.g Linum usitatissimum Lus10031314.g I 0.822
Lus10031882.g Linum usitatissimum Lus10031882.g I 0.822
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I 0.822
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.821
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.821
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.821
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.821
Ca_22171 Cicer arietinum Ca_22171 I 0.821
mgf008235m Mimulus guttatus mgf008235m I 0.821
Bra024841 Brassica rapa Bra024841 I 0.818
PGSC0003DMG400026959 Solanum tuberosum PGSC0003DMG400026959 I 0.818
POPTR_0015s05180 Populus trichocarpa POPTR_0015s05180 I 0.818
TCM_039880 Theobroma cacao TCM_039880 I 0.818
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.818
cassava36596.valid.m1 Manihot esculenta cassava36596.valid.m1 I 0.818
Cucsa.122150 Cucumis sativus Cucsa.122150 I 0.818
evm.TU.supercontig_2.118 Carica papaya evm.TU.supercontig_2.118 I 0.818
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.818
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.816
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.816
F775_43255 Aegilops tauschii F775_43255 I 0.816
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.816
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.816
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.816
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.816
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.816
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.816
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.816
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.816
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.816
OS03G0237250 Oryza sativa OS03G0237250 I 0.816
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.816
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.816
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.812
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.812
Pm005926 Prunus mume Pm005926 I 0.812
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.812
Gorai.005G134600 Gossypium raimondii Gorai.005G134600 I 0.812
Gorai.006G190500 Gossypium raimondii Gorai.006G190500 I 0.812
Gorai.007G002600 Gossypium raimondii Gorai.007G002600 I 0.812
Gorai.009G329200 Gossypium raimondii Gorai.009G329200 I 0.812
Lus10026369.g Linum usitatissimum Lus10026369.g I 0.812
PK25720.1 Cannabis sativa PK25720.1 I 0.812
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.812
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.811
SGR5 Arabidopsis thaliana AT2G01940 D 0.811
Bo2g134790 Brassica oleracea Bo2g134790 I 0.811
Bo3g139880 Brassica oleracea Bo3g139880 I 0.811
Bo9g070370 Brassica oleracea Bo9g070370 I 0.811
Bra010981 Brassica rapa Bra010981 I 0.811
Bra017432 Brassica rapa Bra017432 I 0.811
Bra026624 Brassica rapa Bra026624 I 0.811
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.811
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.811
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.811
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.811
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.811
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.811
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.811
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.811
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.811
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.811
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.811
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.811
Bo5g043540 Brassica oleracea Bo5g043540 I 0.806
Bra024771 Brassica rapa Bra024771 I 0.806
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.806
OB09G18760 Oryza brachyantha OB09G18760 I 0.806
GSMUA_Achr10G29940_001 Musa acuminata GSMUA_Achr10G29940_001 I 0.803
Gorai.008G169500 Gossypium raimondii Gorai.008G169500 I 0.803
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I 0.803
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I 0.788
IDD14 Arabidopsis thaliana AT1G68130 I 0.788
Bo6g097320 Brassica oleracea Bo6g097320 I 0.788
Bo6g106560 Brassica oleracea Bo6g106560 I 0.788
Bra004050 Brassica rapa Bra004050 I 0.788
Bra004283 Brassica rapa Bra004283 I 0.788
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I 0.788
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I 0.788
Solyc01g005060.2 Solanum lycopersicum Solyc01g005060.2 I 0.788
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I 0.788
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I 0.788
Carubv10020337m.g Capsella rubella Carubv10020337m.g I 0.788
Gorai.005G154300 Gossypium raimondii Gorai.005G154300 I 0.788
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I 0.788
PK17145.1 Cannabis sativa PK17145.1 I 0.786
Cla005913 Citrullus lanatus Cla005913 I 0.783
LPERR08G14510 Leersia perrieri LPERR08G14510 I 0.762
OBART08G17550 Oryza barthii OBART08G17550 I 0.762
OGLUM08G18370 Oryza glumaepatula OGLUM08G18370 I 0.762
OMERI08G14120 Oryza meridionalis OMERI08G14120 I 0.762
ONIVA08G19430 Oryza nivara ONIVA08G19430 I 0.762
OPUNC08G15410 Oryza punctata OPUNC08G15410 I 0.762
ORGLA08G0153600 Oryza glaberrima ORGLA08G0153600 I 0.762
ORGLA09G0169200 Oryza glaberrima ORGLA09G0169200 I 0.762
OS08G0467100 Oryza sativa OS08G0467100 I 0.762
estExt_Genewise1.C_2180024 Physcomitrella patens estExt_Genewise1.C_2180024 N 0.759