CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.005G154300
(
Gossypium raimondii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gorai.005G154300
T143014_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SGR5
M06805_2.00
Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW
Dap-seq
OMalley et al.(2016)
SGR5_col_a
0.773
0.927
SGR5
M06806_2.00
Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW
Dap-seq
OMalley et al.(2016)
SGR5_colamp_a
0.773
0.927
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.005G154300.1
C2H2 ZF
134
155
WVCDKCSKGYAVQSDYKAHLKI
Gorai.005G154300.1
C2H2 ZF
156
180
CGTRGHSCDCGRVFSRVESFIEHQD
Links
Other
C2H2 ZF
family TFs
Other
Gossypium raimondii
TFs
100 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA05G26780
Glycine max
GLYMA05G26780
I
0.794
GLYMA08G09760
Glycine max
GLYMA08G09760
I
0.794
PRUPE_ppa004447mg
Prunus persica
PRUPE_ppa004447mg
I
0.794
Ca_05083
Cicer arietinum
Ca_05083
I
0.794
Pm025274
Prunus mume
Pm025274
I
0.794
Ciclev10015315m.g
Citrus clementina
Ciclev10015315m.g
I
0.794
Lus10031314.g
Linum usitatissimum
Lus10031314.g
I
0.794
Lus10031882.g
Linum usitatissimum
Lus10031882.g
I
0.794
orange1.1g014184m.g
Citrus sinensis
orange1.1g014184m.g
I
0.794
PGSC0003DMG400031049
Solanum tuberosum
PGSC0003DMG400031049
I
0.788
POPTR_0008s13980
Populus trichocarpa
POPTR_0008s13980
I
0.788
POPTR_0010s11160
Populus trichocarpa
POPTR_0010s11160
I
0.788
POPTR_0012s03730
Populus trichocarpa
POPTR_0012s03730
I
0.788
Solyc06g072360.2
Solanum lycopersicum
Solyc06g072360.2
I
0.788
TCM_011210
Theobroma cacao
TCM_011210
I
0.788
VIT_01s0011g06400
Vitis vinifera
VIT_01s0011g06400
I
0.788
VIT_17s0000g01870
Vitis vinifera
VIT_17s0000g01870
I
0.788
Cla018945
Citrullus lanatus
Cla018945
I
0.788
28952.m000016
Ricinus communis
28952.m000016
I
0.788
cassava18079.valid.m1
Manihot esculenta
cassava18079.valid.m1
I
0.788
Cucsa.112090
Cucumis sativus
Cucsa.112090
I
0.788
Aquca_002_01252
Aquilegia coerulea
Aquca_002_01252
I
0.788
Ciclev10020125m.g
Citrus clementina
Ciclev10020125m.g
I
0.788
evm.TU.supercontig_7.131
Carica papaya
evm.TU.supercontig_7.131
I
0.788
gene09325-v1.0-hybrid
Fragaria vesca
gene09325-v1.0-hybrid
I
0.788
Gorai.002G171100
Gossypium raimondii
Gorai.002G171100
I
0.788
Gorai.008G293000
Gossypium raimondii
Gorai.008G293000
I
0.788
orange1.1g037502m.g
Citrus sinensis
orange1.1g037502m.g
I
0.788
SapurV1A.0055s0020
Salix purpurea
SapurV1A.0055s0020
I
0.788
SapurV1A.1169s0070
Salix purpurea
SapurV1A.1169s0070
I
0.788
PRUPE_ppa005331mg
Prunus persica
PRUPE_ppa005331mg
I
0.784
Pm005926
Prunus mume
Pm005926
I
0.784
gene00618-v1.0-hybrid
Fragaria vesca
gene00618-v1.0-hybrid
I
0.784
Gorai.005G134600
Gossypium raimondii
Gorai.005G134600
I
0.784
Gorai.009G329200
Gossypium raimondii
Gorai.009G329200
I
0.784
Lus10026369.g
Linum usitatissimum
Lus10026369.g
I
0.784
PK25720.1
Cannabis sativa
PK25720.1
I
0.784
chr4.CM0387.280.nc
Lotus japonicus
chr4.CM0387.280.nc
I
0.784
BGIOSGA011151
Oryza indica
BGIOSGA011151
I
0.782
BRADI1G68730
Brachypodium distachyon
BRADI1G68730
I
0.782
F775_43255
Aegilops tauschii
F775_43255
I
0.782
GLYMA05G33590
Glycine max
GLYMA05G33590
I
0.782
GLYMA07G12170
Glycine max
GLYMA07G12170
I
0.782
GLYMA08G06130
Glycine max
GLYMA08G06130
I
0.782
GLYMA09G30030
Glycine max
GLYMA09G30030
I
0.782
GRMZM2G074032
Zea mays
GRMZM2G074032
I
0.782
GRMZM2G465595
Zea mays
GRMZM2G465595
I
0.782
LPERR03G08760
Leersia perrieri
LPERR03G08760
I
0.782
OGLUM03G09920
Oryza glumaepatula
OGLUM03G09920
I
0.782
OMERI03G09110
Oryza meridionalis
OMERI03G09110
I
0.782
ONIVA03G10380
Oryza nivara
ONIVA03G10380
I
0.782
OPUNC03G09440
Oryza punctata
OPUNC03G09440
I
0.782
ORGLA03G0094200
Oryza glaberrima
ORGLA03G0094200
I
0.782
ORUFI03G10000
Oryza rufipogon
ORUFI03G10000
I
0.782
OS03G0237250
Oryza sativa
OS03G0237250
I
0.782
Traes_4AS_2718699A7
Triticum aestivum
Traes_4AS_2718699A7
I
0.782
Ca_22171
Cicer arietinum
Ca_22171
I
0.782
mgf008235m
Mimulus guttatus
mgf008235m
I
0.782
Pavir.J12350
Panicum virgatum
Pavir.J12350
I
0.782
Bra024841
Brassica rapa
Bra024841
I
0.779
GSMUA_Achr7G18610_001
Musa acuminata
GSMUA_Achr7G18610_001
I
0.779
PGSC0003DMG400026959
Solanum tuberosum
PGSC0003DMG400026959
I
0.779
POPTR_0015s05180
Populus trichocarpa
POPTR_0015s05180
I
0.779
TCM_039880
Theobroma cacao
TCM_039880
I
0.779
cassava1947.valid.m1
Manihot esculenta
cassava1947.valid.m1
I
0.779
cassava36596.valid.m1
Manihot esculenta
cassava36596.valid.m1
I
0.779
Cucsa.122150
Cucumis sativus
Cucsa.122150
I
0.779
evm.TU.supercontig_2.118
Carica papaya
evm.TU.supercontig_2.118
I
0.779
Gorai.006G190500
Gossypium raimondii
Gorai.006G190500
I
0.779
Gorai.007G002600
Gossypium raimondii
Gorai.007G002600
I
0.779
SapurV1A.0074s0350
Salix purpurea
SapurV1A.0074s0350
I
0.779
Bo5g043540
Brassica oleracea
Bo5g043540
I
0.778
Bra024771
Brassica rapa
Bra024771
I
0.778
GSMUA_Achr10G29940_001
Musa acuminata
GSMUA_Achr10G29940_001
I
0.774
Gorai.008G169500
Gossypium raimondii
Gorai.008G169500
I
0.774
AtIDD16
Arabidopsis thaliana
AT1G25250
I
0.773
SGR5
Arabidopsis thaliana
AT2G01940
D
0.773
Bo2g134790
Brassica oleracea
Bo2g134790
I
0.773
Bo3g139880
Brassica oleracea
Bo3g139880
I
0.773
Bo9g070370
Brassica oleracea
Bo9g070370
I
0.773
Bra010981
Brassica rapa
Bra010981
I
0.773
Bra017432
Brassica rapa
Bra017432
I
0.773
Bra026624
Brassica rapa
Bra026624
I
0.773
SGR5
Arabidopsis lyrata
fgenesh2_kg.5__108__AT2G01940.1
I
0.773
GSMUA_Achr6G02490_001
Musa acuminata
GSMUA_Achr6G02490_001
I
0.773
OB09G18760
Oryza brachyantha
OB09G18760
I
0.773
Bostr.0556s0022
Boechera stricta
Bostr.0556s0022
I
0.773
Bostr.15697s0010
Boechera stricta
Bostr.15697s0010
I
0.773
Cagra.2231s0014
Capsella grandiflora
Cagra.2231s0014
I
0.773
Cagra.3834s0006
Capsella grandiflora
Cagra.3834s0006
I
0.773
Carubv10009424m.g
Capsella rubella
Carubv10009424m.g
I
0.773
Carubv10017254m.g
Capsella rubella
Carubv10017254m.g
I
0.773
Eucgr.G02066
Eucalyptus grandis
Eucgr.G02066
I
0.773
Eucgr.H00574
Eucalyptus grandis
Eucgr.H00574
I
0.773
Eucgr.K02292
Eucalyptus grandis
Eucgr.K02292
I
0.773
Thhalv10004221m.g
Eutrema salsugineum
Thhalv10004221m.g
I
0.773
Thhalv10009376m.g
Eutrema salsugineum
Thhalv10009376m.g
I
0.773
SapurV1A.0015s0850
Salix purpurea
SapurV1A.0015s0850
I
0.765
AMTR_s00024p00098860
Amborella trichopoda
AMTR_s00024p00098860
I
0.760
Solyc01g005060.2
Solanum lycopersicum
Solyc01g005060.2
I
0.760