Cmyd_10006949 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10006949 T134299_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IKZF2
M10105_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_01 		0.827 1.000
IKZF2
M10106_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_02 		0.827 1.000
Ikzf1
M08969_2.00 		Mus musculus
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_MOUSE.H11MO.0.C 		0.804 0.924
IKZF1
M08939_2.00 		Homo sapiens
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_HUMAN.H11MO.0.C 		0.804 0.913
IKZF1
M10301_2.00 		Homo sapiens
NHBYGGGAAYRYB
VRYRTTCCCRVDN		 Transfac
Matys et al.(2006)
V$IK1_01 		0.804 0.913
IKZF1
M10302_2.00 		Homo sapiens
BNNWTCCCRNNN
NNNYGGGAWNNV		 Transfac
Matys et al.(2006)
V$IK2_01 		0.804 0.913
IKZF1
M10303_2.00 		Homo sapiens
KNYHGGGAAYRYY
RRYRTTCCCDRNM		 Transfac
Matys et al.(2006)
V$IK3_01 		0.804 0.913
IKZF1
M10304_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5_01 		0.804 0.913
IKZF1
M10305_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5 		0.804 0.913
IKZF1
M10306_2.00 		Homo sapiens
YYTCCCARA
TYTGGGARR		 Transfac
Matys et al.(2006)
V$LYF1_01 		0.804 0.913
IKZF3
M08320_2.00 		Homo sapiens
TTCCCNNSB
VSNNGGGAA		 ChIP-seq
Schmitges et al.(2016)
Q9UKT9_2-4.RCADE 		0.776 0.837
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10006949 C2H2 ZF 59 81
Cmyd_10006949 C2H2 ZF 118 140
Cmyd_10006949 C2H2 ZF 146 168
Cmyd_10006949 C2H2 ZF 174 197

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIM_0001581701 Anisakis simplex ASIM_0001581701 N
PTRK_0000381700 Parastrongyloides trichosuri PTRK_0000381700 N
PTRK_0001682900 Parastrongyloides trichosuri PTRK_0001682900 N
RSKR_0000161800 Rhabditophanes kr3021 RSKR_0000161800 N
RSKR_0000496500 Rhabditophanes kr3021 RSKR_0000496500 N
SPAL_0000125700 Strongyloides papillosus SPAL_0000125700 N
SPAL_0001000900 Strongyloides papillosus SPAL_0001000900 N
SSTP_0000423800 Strongyloides stercoralis SSTP_0000423800 N
SVE_1854500 Strongyloides venezuelensis SVE_1854500 N
TCNE_0000235701 Toxocara canis TCNE_0000235701 N