Gfo_R004424 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R004424 T135708_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL6
M00228_2.00 		Homo sapiens
NNVNDVRANN
NNTYBHNBNN		 PBM
Barrera et al.(2016)
BCL6_REF 		0.821 0.986
BCL6
M04424_2.00 		Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1 		0.821 0.986
BCL6
M04425_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2 		0.821 0.986
Bcl6
M08097_2.00 		Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN		 ChIP-seq
Mathelier et al.(2014)
MA0463.1 		0.821 0.986
Bcl6
M08024_2.00 		Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD		 ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim 		0.821 0.986
BCL6
M08877_2.00 		Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A 		0.821 0.986
Bcl6
M08972_2.00 		Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A 		0.821 0.986
Bcl6
M09513_2.00 		Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN		 Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578 		0.821 0.986
BCL6
M10180_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_01 		0.821 0.986
BCL6
M10181_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_02 		0.821 0.986
BCL6
M10182_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3_01 		0.821 0.986
BCL6
M10183_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3 		0.821 0.986
BCL6
M10184_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q6 		0.821 0.986
BCL6
M04426_2.00 		Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1 		0.821 0.986
BCL6
M04427_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2 		0.821 0.986
BCL6
M00227_2.00 		Homo sapiens
NTAATTRWNN
NNWYAATTAN		 PBM
Barrera et al.(2016)
BCL6_H676Y 		0.814 0.949
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004424 C2H2 ZF 521 544
Gfo_R004424 C2H2 ZF 549 571
Gfo_R004424 C2H2 ZF 577 599
Gfo_R004424 C2H2 ZF 605 627
Gfo_R004424 C2H2 ZF 633 655
Gfo_R004424 C2H2 ZF 661 684

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R013387 Calypte anna Aan_R013387 I 0.821
Afo_R010236 Aptenodytes forsteri Afo_R010236 I 0.821
Alligator_sinensis_CCG010229.1 Alligator sinensis Alligator_sinensis_CCG010229.1 I 0.821
Brh_R006050 Buceros rhinoceros Brh_R006050 I 0.821
Cmyd_10010560 Chelonia mydas Cmyd_10010560 I 0.819
BCL6 Anolis carolinensis ENSACAG00000006666 I 0.780
ENSAMEG00000000812 Ailuropoda melanoleuca ENSAMEG00000000812 I 0.821
ENSAPLG00000015868 Anas platyrhynchos ENSAPLG00000015868 I 0.791
BCL6 Bos taurus ENSBTAG00000001511 I 0.821
ENSBTAP00000001978-D1 Bos grunniens ENSBTAP00000001978-D1 I 0.821
BCL6 Canis familiaris ENSCAFG00000013904 I 0.821
BCL6 Callithrix jacchus ENSCJAG00000014375 I 0.821
BCL6 Cavia porcellus ENSCPOG00000004090 I 0.821
ENSCSAG00000009138 Chlorocebus sabaeus ENSCSAG00000009138 I 0.821
BCL6 Dasypus novemcinctus ENSDNOG00000004306 I 0.813
Bcl6 Dipodomys ordii ENSDORG00000005608 I 0.821
BCL6 Equus caballus ENSECAG00000004556 I 0.821
BCL6 Erinaceus europaeus ENSEEUG00000000344 I 0.821
BCL6 Echinops telfairi ENSETEG00000014830 I 0.810
ENSFALG00000007407 Ficedula albicollis ENSFALG00000007407 I 0.821
BCL6 Felis catus ENSFCAG00000006810 I 0.821
BCL6 Homo sapiens ENSG00000113916 D 0.821
BCL6 Gallus gallus ENSGALG00000007357 I 0.821
BCL6 Gorilla gorilla ENSGGOG00000026549 I 0.821
BCL6 Loxodonta africana ENSLAFG00000012300 I 0.821
ENSMEUG00000004411 Macropus eugenii ENSMEUG00000004411 I 0.821
BCL6 Meleagris gallopavo ENSMGAG00000007602 I 0.821
BCL6 Microcebus murinus ENSMICG00000001780 I 0.821
BCL6 Myotis lucifugus ENSMLUG00000012905 I 0.821
BCL6 Macaca mulatta ENSMMUG00000009198 I 0.821
ENSMPUG00000003415 Mustela putorius furo ENSMPUG00000003415 I 0.821
Bcl6 Mus musculus ENSMUSG00000022508 D 0.821
ENSNLEG00000006705 Nomascus leucogenys ENSNLEG00000006705 I 0.821
BCL6 Ornithorhynchus anatinus ENSOANG00000000872 I 0.821
BCL6 Oryctolagus cuniculus ENSOCUG00000005429 I 0.821
BCL6 Otolemur garnettii ENSOGAG00000007638 I 0.821
BCL6 Ochotona princeps ENSOPRG00000005797 I 0.821
ENSP00000384371 Macaca fascicularis ENSP00000384371 I 0.821
ENSPANG00000017677 Papio anubis ENSPANG00000017677 I 0.821
ENSPPYG00000014395 Pongo abelii ENSPPYG00000014395 I 0.821
ENSPSIG00000014529 Pelodiscus sinensis ENSPSIG00000014529 I 0.819
BCL6 Pan troglodytes ENSPTRG00000015728 I 0.821
Bcl6 Rattus norvegicus ENSRNOG00000001843 I 0.821
ENSSHAG00000013935 Sarcophilus harrisii ENSSHAG00000013935 I 0.821
BCL6 Sus scrofa ENSSSCG00000011810 I 0.821
BCL6 Taeniopygia guttata ENSTGUG00000009413 I 0.821
BCL6 Tursiops truncatus ENSTTRG00000017230 I 0.821
Myotis_brandtii_BCL6_10016106 Myotis brandtii Myotis_brandtii_BCL6_10016106 I 0.821
Pvit_01837 Pogona vitticeps Pvit_01837 I 0.782
Tal_R005794 Tyto alba Tal_R005794 I 0.821
bcl6.S Xenopus laevis XB-GENE-17336238 I 0.778
bcl6 Xenopus tropicalis XB-GENE-984479 I 0.780
bcl6.L Xenopus laevis XB-GENE-984483 I 0.780