Cmyd_10010560 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10010560 T134349_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL6
M00228_2.00 		Homo sapiens
NNVNDVRANN
NNTYBHNBNN		 PBM
Barrera et al.(2016)
BCL6_REF 		0.825 0.986
BCL6
M04424_2.00 		Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1 		0.825 0.986
BCL6
M04425_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2 		0.825 0.986
Bcl6
M08097_2.00 		Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN		 ChIP-seq
Mathelier et al.(2014)
MA0463.1 		0.825 0.986
Bcl6
M08024_2.00 		Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD		 ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim 		0.825 0.986
BCL6
M08877_2.00 		Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A 		0.825 0.986
Bcl6
M08972_2.00 		Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A 		0.825 0.986
Bcl6
M09513_2.00 		Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN		 Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578 		0.825 0.986
BCL6
M10180_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_01 		0.825 0.986
BCL6
M10181_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_02 		0.825 0.986
BCL6
M10182_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3_01 		0.825 0.986
BCL6
M10183_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3 		0.825 0.986
BCL6
M10184_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q6 		0.825 0.986
BCL6
M04426_2.00 		Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1 		0.825 0.986
BCL6
M04427_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2 		0.825 0.986
BCL6
M00227_2.00 		Homo sapiens
NTAATTRWNN
NNWYAATTAN		 PBM
Barrera et al.(2016)
BCL6_H676Y 		0.819 0.949
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10010560 C2H2 ZF 516 539
Cmyd_10010560 C2H2 ZF 544 566
Cmyd_10010560 C2H2 ZF 572 594
Cmyd_10010560 C2H2 ZF 600 622
Cmyd_10010560 C2H2 ZF 628 650
Cmyd_10010560 C2H2 ZF 656 679

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPSIG00000014529 Pelodiscus sinensis ENSPSIG00000014529 I 0.827
ENSAMEG00000000812 Ailuropoda melanoleuca ENSAMEG00000000812 I 0.825
BCL6 Bos taurus ENSBTAG00000001511 I 0.825
BCL6 Canis familiaris ENSCAFG00000013904 I 0.825
BCL6 Callithrix jacchus ENSCJAG00000014375 I 0.825
BCL6 Cavia porcellus ENSCPOG00000004090 I 0.825
ENSCSAG00000009138 Chlorocebus sabaeus ENSCSAG00000009138 I 0.825
Bcl6 Dipodomys ordii ENSDORG00000005608 I 0.825
BCL6 Equus caballus ENSECAG00000004556 I 0.825
BCL6 Erinaceus europaeus ENSEEUG00000000344 I 0.825
ENSFALG00000007407 Ficedula albicollis ENSFALG00000007407 I 0.825
BCL6 Felis catus ENSFCAG00000006810 I 0.825
BCL6 Homo sapiens ENSG00000113916 D 0.825
BCL6 Gallus gallus ENSGALG00000007357 I 0.825
BCL6 Gorilla gorilla ENSGGOG00000026549 I 0.825
BCL6 Loxodonta africana ENSLAFG00000012300 I 0.825
ENSMEUG00000004411 Macropus eugenii ENSMEUG00000004411 I 0.825
BCL6 Meleagris gallopavo ENSMGAG00000007602 I 0.825
BCL6 Microcebus murinus ENSMICG00000001780 I 0.825
BCL6 Myotis lucifugus ENSMLUG00000012905 I 0.825
BCL6 Macaca mulatta ENSMMUG00000009198 I 0.825
ENSMPUG00000003415 Mustela putorius furo ENSMPUG00000003415 I 0.825
Bcl6 Mus musculus ENSMUSG00000022508 D 0.825
ENSNLEG00000006705 Nomascus leucogenys ENSNLEG00000006705 I 0.825
BCL6 Ornithorhynchus anatinus ENSOANG00000000872 I 0.825
BCL6 Oryctolagus cuniculus ENSOCUG00000005429 I 0.825
BCL6 Otolemur garnettii ENSOGAG00000007638 I 0.825
BCL6 Ochotona princeps ENSOPRG00000005797 I 0.825
ENSPANG00000017677 Papio anubis ENSPANG00000017677 I 0.825
ENSPPYG00000014395 Pongo abelii ENSPPYG00000014395 I 0.825
BCL6 Pan troglodytes ENSPTRG00000015728 I 0.825
Bcl6 Rattus norvegicus ENSRNOG00000001843 I 0.825
ENSSHAG00000013935 Sarcophilus harrisii ENSSHAG00000013935 I 0.825
BCL6 Sus scrofa ENSSSCG00000011810 I 0.825
BCL6 Taeniopygia guttata ENSTGUG00000009413 I 0.825
BCL6 Tursiops truncatus ENSTTRG00000017230 I 0.825
Aan_R013387 Calypte anna Aan_R013387 I 0.825
Afo_R010236 Aptenodytes forsteri Afo_R010236 I 0.825
Alligator_sinensis_CCG010229.1 Alligator sinensis Alligator_sinensis_CCG010229.1 I 0.825
Brh_R006050 Buceros rhinoceros Brh_R006050 I 0.825
ENSBTAP00000001978-D1 Bos grunniens ENSBTAP00000001978-D1 I 0.825
ENSP00000384371 Macaca fascicularis ENSP00000384371 I 0.825
Myotis_brandtii_BCL6_10016106 Myotis brandtii Myotis_brandtii_BCL6_10016106 I 0.825
Tal_R005794 Tyto alba Tal_R005794 I 0.825
Gfo_R004424 Geospiza fortis Gfo_R004424 I 0.819
BCL6 Dasypus novemcinctus ENSDNOG00000004306 I 0.817
BCL6 Echinops telfairi ENSETEG00000014830 I 0.815
ENSAPLG00000015868 Anas platyrhynchos ENSAPLG00000015868 I 0.796
Pvit_01837 Pogona vitticeps Pvit_01837 I 0.789
BCL6 Anolis carolinensis ENSACAG00000006666 I 0.787
bcl6 Xenopus tropicalis XB-GENE-984479 I 0.787
bcl6.L Xenopus laevis XB-GENE-984483 I 0.787
bcl6.S Xenopus laevis XB-GENE-17336238 I 0.785