Gfo_R006733 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R006733 T135746_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.827 1.000
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.827 1.000
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.806 0.947
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.806 0.947
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.806 0.947
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R006733 C2H2 ZF 429 450
Gfo_R006733 C2H2 ZF 456 478
Gfo_R006733 C2H2 ZF 786 808
Gfo_R006733 C2H2 ZF 814 836
Gfo_R006733 C2H2 ZF 844 867

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASU_02611 Ascaris suum ASU_02611 N 0.000
GPUH_0001628601 Gongylonema pulchrum GPUH_0001628601 N 0.000
L889_g26115 Steinernema feltiae L889_g26115 N 0.000
L892_g24984 Steinernema scapterisci L892_g24984 N 0.000
L893_g29578 Steinernema glaseri L893_g29578 N 0.000
L898_g9346 Steinernema monticolum L898_g9346 N 0.000
L898_g9348 Steinernema monticolum L898_g9348 N 0.000
nDi.2.2.2.g07634 Dirofilaria immitis nDi.2.2.2.g07634 N 0.000
nLs.2.1.2.g07567 Litomosoides sigmodontis nLs.2.1.2.g07567 N 0.000
nOo.2.0.1.g05364 Onchocerca ochengi nOo.2.0.1.g05364 N 0.000
PPA14638 Pristionchus pacificus PPA14638 N 0.000
scaffold516-EXSNAP2012.12 Pristionchus exspectatus scaffold516-EXSNAP2012.12 N 0.000
TCNE_0001553601 Toxocara canis TCNE_0001553601 N 0.000
TCNE_0001553801 Toxocara canis TCNE_0001553801 N 0.000
WBGene00246599 Onchocerca volvulus WBGene00246599 N 0.000
WUBG_17286 Wuchereria bancrofti WUBG_17286 N 0.000