Gfo_R012649 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R012649 T135847_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.825 0.991
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.825 0.991
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.825 0.991
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.825 0.991
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.825 0.991
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.825 0.991
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.825 0.991
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.825 0.991
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.825 0.991
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.825 0.991
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.825 0.991
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.825 0.991
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.821 0.982
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.767 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R012649 C2H2 ZF 123 145
Gfo_R012649 C2H2 ZF 154 176
Gfo_R012649 C2H2 ZF 180 202
Gfo_R012649 C2H2 ZF 208 230
Gfo_R012649 C2H2 ZF 236 257

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008738 Calypte anna Aan_R008738 N 0.000
Afo_R010661 Aptenodytes forsteri Afo_R010661 N 0.000
ENSAPLG00000003921 Anas platyrhynchos ENSAPLG00000003921 N 0.000
ahr2 Danio rerio ENSDARG00000021833 N 0.000
ENSFALG00000003870 Ficedula albicollis ENSFALG00000003870 N 0.000
ahr2 Gasterosteus aculeatus ENSGACG00000008466 N 0.000
ENSGALG00000004322 Gallus gallus ENSGALG00000004322 N 0.000
ENSGMOG00000004709 Gadus morhua ENSGMOG00000004709 N 0.000
ENSOCUG00000028055 Oryctolagus cuniculus ENSOCUG00000028055 N 0.000
ENSONIG00000010232 Oreochromis niloticus ENSONIG00000010232 N 0.000
ENSORLG00000018196 Oryzias latipes ENSORLG00000018196 N 0.000
ENSPSIG00000018136 Pelodiscus sinensis ENSPSIG00000018136 N 0.000
ahr2 Tetraodon nigroviridis ENSTNIG00000017165 N 0.000
ahr2a Takifugu rubripes ENSTRUG00000009303 N 0.000
ENSXMAG00000005053 Xiphophorus maculatus ENSXMAG00000005053 N 0.000
Gfo_R012068 Geospiza fortis Gfo_R012068 N 0.000
JC7993 Xenopus laevis JC7993 N 0.000
ahr.S Xenopus laevis XB-GENE-983111 N 0.000