Gfo_R012649 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R012649 T135847_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.825 0.991
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.825 0.991
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.825 0.991
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.825 0.991
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.825 0.991
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.825 0.991
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.825 0.991
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.825 0.991
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.825 0.991
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.825 0.991
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.825 0.991
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.825 0.991
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.821 0.982
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.767 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R012649 C2H2 ZF 123 145
Gfo_R012649 C2H2 ZF 154 176
Gfo_R012649 C2H2 ZF 180 202
Gfo_R012649 C2H2 ZF 208 230
Gfo_R012649 C2H2 ZF 236 257

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SNAI2 Anolis carolinensis ENSACAG00000012332 I 0.827
ENSAPLG00000003920 Anas platyrhynchos ENSAPLG00000003920 I 0.827
ENSFALG00000005762 Ficedula albicollis ENSFALG00000005762 I 0.827
SNAI2 Meleagris gallopavo ENSMGAG00000010813 I 0.827
SNAI2 Monodelphis domestica ENSMODG00000010173 I 0.827
SNAI2 Ornithorhynchus anatinus ENSOANG00000007267 I 0.827
ENSPSIG00000016395 Pelodiscus sinensis ENSPSIG00000016395 I 0.827
SNAI2 Pteropus vampyrus ENSPVAG00000009457 I 0.827
ENSSHAG00000004205 Sarcophilus harrisii ENSSHAG00000004205 I 0.827
SNAI2 Taeniopygia guttata ENSTGUG00000010914 I 0.827
Aan_R012932 Calypte anna Aan_R012932 I 0.827
Afo_R005870 Aptenodytes forsteri Afo_R005870 I 0.827
Alligator_sinensis_CCG016283.1 Alligator sinensis Alligator_sinensis_CCG016283.1 I 0.827
Brh_R006038 Buceros rhinoceros Brh_R006038 I 0.827
Ogr04681 Ophisaurus gracilis Ogr04681 I 0.827
Pvit_15376 Pogona vitticeps Pvit_15376 I 0.827
Tal_R003673 Tyto alba Tal_R003673 I 0.827
AAB34088 Xenopus laevis AAB34088 I 0.827
AAK54135 Xenopus tropicalis AAK54135 I 0.827
AAK54137 Xenopus laevis AAK54137 I 0.827
AAK54139 Xenopus laevis AAK54139 I 0.827
snai2 Xenopus tropicalis XB-GENE-487371 I 0.827
snai2.L Xenopus laevis XB-GENE-6255814 I 0.827
snai2.S Xenopus laevis XB-GENE-865699 I 0.827
ENSAMEG00000009606 Ailuropoda melanoleuca ENSAMEG00000009606 I 0.825
SNAI2 Canis familiaris ENSCAFG00000006638 I 0.825
SNAI2 Choloepus hoffmanni ENSCHOG00000007046 I 0.825
SNAI2 Callithrix jacchus ENSCJAG00000013499 I 0.825
ENSCPOG00000014827 Cavia porcellus ENSCPOG00000014827 I 0.825
ENSCSAG00000014787 Chlorocebus sabaeus ENSCSAG00000014787 I 0.825
SNAI2 Dasypus novemcinctus ENSDNOG00000035997 I 0.825
SNAI2 Equus caballus ENSECAG00000010120 I 0.825
SNAI2 Felis catus ENSFCAG00000015779 I 0.825
SNAI2 Homo sapiens ENSG00000019549 D 0.825
ENSGALG00000015241 Gallus gallus ENSGALG00000015241 I 0.825
SNAI2 Gorilla gorilla ENSGGOG00000000959 I 0.825
SNAI2 Loxodonta africana ENSLAFG00000009299 I 0.825
SNAI2 Microcebus murinus ENSMICG00000000335 I 0.825
SNAI2 Myotis lucifugus ENSMLUG00000001086 I 0.825
SNAI2 Macaca mulatta ENSMMUG00000016195 I 0.825
ENSMPUG00000010793 Mustela putorius furo ENSMPUG00000010793 I 0.825
Snai2 Mus musculus ENSMUSG00000022676 D 0.825
ENSNLEG00000013421 Nomascus leucogenys ENSNLEG00000013421 I 0.825
SNAI2 Oryctolagus cuniculus ENSOCUG00000012254 I 0.825
SNAI2 Otolemur garnettii ENSOGAG00000010500 I 0.825
ENSPANG00000017540 Papio anubis ENSPANG00000017540 I 0.825
SNAI2 Procavia capensis ENSPCAG00000001788 I 0.825
ENSPPYG00000018578 Pongo abelii ENSPPYG00000018578 I 0.825
SNAI2 Pan troglodytes ENSPTRG00000020235 I 0.825
Snai2 Rattus norvegicus ENSRNOG00000047699 I 0.825
ENSSTOG00000028743 Ictidomys tridecemlineatus ENSSTOG00000028743 I 0.825
ENSP00000380034 Macaca fascicularis ENSP00000380034 I 0.825
Myotis_brandtii_Snai2_10018131 Myotis brandtii Myotis_brandtii_Snai2_10018131 I 0.825
ENSLACG00000005413 Latimeria chalumnae ENSLACG00000005413 I 0.823
ENSMEUG00000009510 Macropus eugenii ENSMEUG00000009510 I 0.823
ENSSSCG00000024404 Sus scrofa ENSSSCG00000024404 I 0.817
ENSSSCG00000026570 Sus scrofa ENSSSCG00000026570 I 0.817
SNAI2 Bos taurus ENSBTAG00000013227 I 0.813
ENSOARG00000013030 Ovis aries ENSOARG00000013030 I 0.813
ENSP00000020945-D1 Bos grunniens ENSP00000020945-D1 I 0.813
ENSLOCG00000005992 Lepisosteus oculatus ENSLOCG00000005992 I 0.807
ENSONIG00000009542 Oreochromis niloticus ENSONIG00000009542 I 0.807
snai2 Oryzias latipes ENSORLG00000017475 I 0.807
snai2 Tetraodon nigroviridis ENSTNIG00000008504 I 0.807
snai2 Takifugu rubripes ENSTRUG00000006860 I 0.807
ENSGMOG00000002669 Gadus morhua ENSGMOG00000002669 I 0.805
snai2 Danio rerio ENSDARG00000040046 I 0.803
snai2 Gasterosteus aculeatus ENSGACG00000017935 I 0.803
ENSPFOG00000014336 Poecilia formosa ENSPFOG00000014336 I 0.803
ENSXMAG00000019030 Xiphophorus maculatus ENSXMAG00000019030 I 0.803
ENSAMXG00000011013 Astyanax mexicanus ENSAMXG00000011013 I 0.783
ENSLACG00000004705 Latimeria chalumnae ENSLACG00000004705 I 0.778
ENSLOCG00000004887 Lepisosteus oculatus ENSLOCG00000004887 I 0.775
LCUP013268 Lucilia cuprina LCUP013268 I 0.772
MDOA014024 Musca domestica MDOA014024 I 0.772
GH13754 Drosophila grimshawi FBgn0121230 I 0.769
GI17894 Drosophila mojavensis FBgn0140635 I 0.769
GJ17399 Drosophila virilis FBgn0204571 I 0.769
GK18133 Drosophila willistoni FBgn0220132 I 0.769
LDEC001157 Leptinotarsa decemlineata LDEC001157 I 0.769
CapteG76255 Capitella teleta CapteG76255 I 0.767
esg Drosophila melanogaster FBgn0001981 D 0.767
GA17666 Drosophila pseudoobscura FBgn0077676 I 0.767
GF15382 Drosophila ananassae FBgn0092407 I 0.767
GG25158 Drosophila erecta FBgn0117283 I 0.767
GL26425 Drosophila persimilis FBgn0164007 I 0.767
GE20968 Drosophila yakuba FBgn0238253 I 0.767
TC014474 Tribolium castaneum TC014474 I 0.767
Sakowv30043351m.g Saccoglossus kowalevskii Sakowv30043351m.g I 0.764
Alligator_sinensis_CCG001703.1 Alligator sinensis Alligator_sinensis_CCG001703.1 I 0.762
LotgiG114290 Lottia gigantea LotgiG114290 I 0.761
snai1 Xenopus tropicalis XB-GENE-479970 I 0.759
snai1.S Xenopus laevis XB-GENE-865328 I 0.759
Cmyd_10017446 Chelonia mydas Cmyd_10017446 I 0.758
GD24004 Drosophila simulans FBgn0195364 I 0.757
HMEL002306 Heliconius melpomene HMEL002306 I 0.757
KGM_17970 Danaus plexippus KGM_17970 I 0.757
L798_10614 Zootermopsis nevadensis L798_10614 I 0.757
MCINX001355 Melitaea cinxia MCINX001355 I 0.757
ENSPSIG00000003607 Pelodiscus sinensis ENSPSIG00000003607 I 0.756
PPAI008011 Phlebotomus papatasi PPAI008011 I 0.756