snai2 (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000008504 T112032_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.805 0.939
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.805 0.939
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.805 0.939
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.805 0.939
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.805 0.939
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.805 0.939
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.805 0.939
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.805 0.939
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.805 0.939
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.805 0.939
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.805 0.939
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.805 0.939
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.802 0.930
wor
M03664_2.00 		Drosophila melanogaster
GYRACAGGTGYAH
DTRCACCTGTYRC		 SELEX
Nitta et al.(2015)
wor_1 		0.759 0.789
wor
M03665_2.00 		Drosophila melanogaster
DTRCACCTGTYGY
RCRACAGGTGYAH		 SELEX
Nitta et al.(2015)
wor_2 		0.759 0.789
wor
M06051_2.00 		Drosophila melanogaster
CACCTGY
RCAGGTG		 B1H
Zhu et al.(2011)
wor_SANGER_2.5_FBgn0001983 		0.759 0.789
wor
M06052_2.00 		Drosophila melanogaster
VCACCTGY
RCAGGTGB		 B1H
Zhu et al.(2011)
wor_SOLEXA_2.5_FBgn0001983 		0.759 0.789
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000011344 C2H2 ZF 120 142
ENSTNIP00000011344 C2H2 ZF 151 173
ENSTNIP00000011344 C2H2 ZF 177 199
ENSTNIP00000011344 C2H2 ZF 205 227
ENSTNIP00000011344 C2H2 ZF 233 254

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSLOCG00000005992 Lepisosteus oculatus ENSLOCG00000005992 I 0.827
ENSONIG00000009542 Oreochromis niloticus ENSONIG00000009542 I 0.827
snai2 Oryzias latipes ENSORLG00000017475 I 0.827
snai2 Takifugu rubripes ENSTRUG00000006860 I 0.827
ENSGMOG00000002669 Gadus morhua ENSGMOG00000002669 I 0.825
snai2 Gasterosteus aculeatus ENSGACG00000017935 I 0.823
ENSPFOG00000014336 Poecilia formosa ENSPFOG00000014336 I 0.823
ENSXMAG00000019030 Xiphophorus maculatus ENSXMAG00000019030 I 0.823
snai2 Danio rerio ENSDARG00000040046 I 0.815
SNAI2 Anolis carolinensis ENSACAG00000012332 I 0.807
ENSAPLG00000003920 Anas platyrhynchos ENSAPLG00000003920 I 0.807
ENSFALG00000005762 Ficedula albicollis ENSFALG00000005762 I 0.807
SNAI2 Meleagris gallopavo ENSMGAG00000010813 I 0.807
SNAI2 Monodelphis domestica ENSMODG00000010173 I 0.807
SNAI2 Ornithorhynchus anatinus ENSOANG00000007267 I 0.807
ENSPSIG00000016395 Pelodiscus sinensis ENSPSIG00000016395 I 0.807
SNAI2 Pteropus vampyrus ENSPVAG00000009457 I 0.807
ENSSHAG00000004205 Sarcophilus harrisii ENSSHAG00000004205 I 0.807
SNAI2 Taeniopygia guttata ENSTGUG00000010914 I 0.807
Aan_R012932 Calypte anna Aan_R012932 I 0.807
Afo_R005870 Aptenodytes forsteri Afo_R005870 I 0.807
Alligator_sinensis_CCG016283.1 Alligator sinensis Alligator_sinensis_CCG016283.1 I 0.807
Brh_R006038 Buceros rhinoceros Brh_R006038 I 0.807
Gfo_R012649 Geospiza fortis Gfo_R012649 I 0.807
Ogr04681 Ophisaurus gracilis Ogr04681 I 0.807
Pvit_15376 Pogona vitticeps Pvit_15376 I 0.807
Tal_R003673 Tyto alba Tal_R003673 I 0.807
AAB34088 Xenopus laevis AAB34088 I 0.807
AAK54135 Xenopus tropicalis AAK54135 I 0.807
AAK54137 Xenopus laevis AAK54137 I 0.807
AAK54139 Xenopus laevis AAK54139 I 0.807
snai2 Xenopus tropicalis XB-GENE-487371 I 0.807
snai2.L Xenopus laevis XB-GENE-6255814 I 0.807
snai2.S Xenopus laevis XB-GENE-865699 I 0.807
ENSAMEG00000009606 Ailuropoda melanoleuca ENSAMEG00000009606 I 0.805
SNAI2 Canis familiaris ENSCAFG00000006638 I 0.805
SNAI2 Choloepus hoffmanni ENSCHOG00000007046 I 0.805
SNAI2 Callithrix jacchus ENSCJAG00000013499 I 0.805
ENSCPOG00000014827 Cavia porcellus ENSCPOG00000014827 I 0.805
ENSCSAG00000014787 Chlorocebus sabaeus ENSCSAG00000014787 I 0.805
SNAI2 Dasypus novemcinctus ENSDNOG00000035997 I 0.805
SNAI2 Equus caballus ENSECAG00000010120 I 0.805
SNAI2 Felis catus ENSFCAG00000015779 I 0.805
SNAI2 Homo sapiens ENSG00000019549 D 0.805
ENSGALG00000015241 Gallus gallus ENSGALG00000015241 I 0.805
SNAI2 Gorilla gorilla ENSGGOG00000000959 I 0.805
SNAI2 Loxodonta africana ENSLAFG00000009299 I 0.805
SNAI2 Microcebus murinus ENSMICG00000000335 I 0.805
SNAI2 Myotis lucifugus ENSMLUG00000001086 I 0.805
SNAI2 Macaca mulatta ENSMMUG00000016195 I 0.805
ENSMPUG00000010793 Mustela putorius furo ENSMPUG00000010793 I 0.805
Snai2 Mus musculus ENSMUSG00000022676 D 0.805
ENSNLEG00000013421 Nomascus leucogenys ENSNLEG00000013421 I 0.805
SNAI2 Oryctolagus cuniculus ENSOCUG00000012254 I 0.805
SNAI2 Otolemur garnettii ENSOGAG00000010500 I 0.805
ENSPANG00000017540 Papio anubis ENSPANG00000017540 I 0.805
SNAI2 Procavia capensis ENSPCAG00000001788 I 0.805
ENSPPYG00000018578 Pongo abelii ENSPPYG00000018578 I 0.805
SNAI2 Pan troglodytes ENSPTRG00000020235 I 0.805
Snai2 Rattus norvegicus ENSRNOG00000047699 I 0.805
ENSSSCG00000024404 Sus scrofa ENSSSCG00000024404 I 0.805
ENSSSCG00000026570 Sus scrofa ENSSSCG00000026570 I 0.805
ENSSTOG00000028743 Ictidomys tridecemlineatus ENSSTOG00000028743 I 0.805
ENSP00000380034 Macaca fascicularis ENSP00000380034 I 0.805
Myotis_brandtii_Snai2_10018131 Myotis brandtii Myotis_brandtii_Snai2_10018131 I 0.805
ENSMEUG00000009510 Macropus eugenii ENSMEUG00000009510 I 0.804
ENSLACG00000005413 Latimeria chalumnae ENSLACG00000005413 I 0.803
SNAI2 Bos taurus ENSBTAG00000013227 I 0.801
ENSOARG00000013030 Ovis aries ENSOARG00000013030 I 0.801
ENSP00000020945-D1 Bos grunniens ENSP00000020945-D1 I 0.801
HMEL002306 Heliconius melpomene HMEL002306 I 0.769
KGM_17970 Danaus plexippus KGM_17970 I 0.769
L798_10614 Zootermopsis nevadensis L798_10614 I 0.769
MCINX001355 Melitaea cinxia MCINX001355 I 0.769
BGIBMGA006230 Bombyx mori BGIBMGA006230 I 0.767
ENSAMXG00000011013 Astyanax mexicanus ENSAMXG00000011013 I 0.763
PHUM091060 Pediculus humanus PHUM091060 I 0.763
estExt_fgenesh2_kg.C_190001 Branchiostoma floridae estExt_fgenesh2_kg.C_190001 I 0.761
LCUP013268 Lucilia cuprina LCUP013268 I 0.760
MDOA014024 Musca domestica MDOA014024 I 0.760
wor Drosophila melanogaster FBgn0001983 D 0.759
GF14525 Drosophila ananassae FBgn0091552 I 0.759
GG24207 Drosophila erecta FBgn0116339 I 0.759
GI22651 Drosophila mojavensis FBgn0145379 I 0.759
GM14357 Drosophila sechellia FBgn0169282 I 0.759
GD21956 Drosophila simulans FBgn0193371 I 0.759
GJ23203 Drosophila virilis FBgn0210305 I 0.759
GK18253 Drosophila willistoni FBgn0220252 I 0.759
GE19402 Drosophila yakuba FBgn0236745 I 0.759
NV17743 Nasonia vitripennis NV17743 I 0.759
ENSLACG00000004705 Latimeria chalumnae ENSLACG00000004705 I 0.758
GH13754 Drosophila grimshawi FBgn0121230 I 0.757
GI17894 Drosophila mojavensis FBgn0140635 I 0.757
GJ17399 Drosophila virilis FBgn0204571 I 0.757
GK18133 Drosophila willistoni FBgn0220132 I 0.757
RPRC005707 Rhodnius prolixus RPRC005707 I 0.757
CLEC007039 Cimex lectularius CLEC007039 I 0.757
LDEC001157 Leptinotarsa decemlineata LDEC001157 I 0.757
CapteG76255 Capitella teleta CapteG76255 I 0.756
GA17994 Drosophila pseudoobscura FBgn0078003 I 0.756
GH13119 Drosophila grimshawi FBgn0120596 I 0.756
GL26594 Drosophila persimilis FBgn0164176 I 0.756