Cmyd_10017446 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10017446 T134453_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.756 0.904
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.756 0.904
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.756 0.904
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.756 0.904
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.756 0.904
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.756 0.904
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.756 0.904
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.756 0.904
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.756 0.904
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.756 0.904
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.756 0.904
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.756 0.904
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10017446 C2H2 ZF 118 140
Cmyd_10017446 C2H2 ZF 149 171
Cmyd_10017446 C2H2 ZF 175 197
Cmyd_10017446 C2H2 ZF 203 225
Cmyd_10017446 C2H2 ZF 231 252

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPSIG00000003607 Pelodiscus sinensis ENSPSIG00000003607 I 0.825
ENSLACG00000017707 Latimeria chalumnae ENSLACG00000017707 I 0.823
snai1 Xenopus tropicalis XB-GENE-479970 I 0.823
snai1.S Xenopus laevis XB-GENE-865328 I 0.820
Pvit_03333 Pogona vitticeps Pvit_03333 N 0.818
SNAI1 Anolis carolinensis ENSACAG00000015607 N 0.816
Ogr08528 Ophisaurus gracilis Ogr08528 N 0.816
Alligator_sinensis_CCG001703.1 Alligator sinensis Alligator_sinensis_CCG001703.1 I 0.815
ENSAPLG00000014633 Anas platyrhynchos ENSAPLG00000014633 N 0.813
ENSFALG00000012974 Ficedula albicollis ENSFALG00000012974 N 0.813
SNAI1 Gallus gallus ENSGALG00000008018 N 0.813
SNAI1 Meleagris gallopavo ENSMGAG00000009447 N 0.813
SNAI1 Taeniopygia guttata ENSTGUG00000008724 N 0.813
Aan_R003278 Calypte anna Aan_R003278 N 0.813
Afo_R003266 Aptenodytes forsteri Afo_R003266 N 0.813
Gfo_R009598 Geospiza fortis Gfo_R009598 N 0.813
SNAI1 Ornithorhynchus anatinus ENSOANG00000008681 N 0.811
SNAI2 Anolis carolinensis ENSACAG00000012332 I 0.758
ENSAPLG00000003920 Anas platyrhynchos ENSAPLG00000003920 I 0.758
ENSFALG00000005762 Ficedula albicollis ENSFALG00000005762 I 0.758
ENSMEUG00000009510 Macropus eugenii ENSMEUG00000009510 I 0.758
SNAI2 Meleagris gallopavo ENSMGAG00000010813 I 0.758
SNAI2 Monodelphis domestica ENSMODG00000010173 I 0.758
SNAI2 Ornithorhynchus anatinus ENSOANG00000007267 I 0.758
ENSPSIG00000016395 Pelodiscus sinensis ENSPSIG00000016395 I 0.758
SNAI2 Pteropus vampyrus ENSPVAG00000009457 I 0.758
ENSSHAG00000004205 Sarcophilus harrisii ENSSHAG00000004205 I 0.758
SNAI2 Taeniopygia guttata ENSTGUG00000010914 I 0.758
Aan_R012932 Calypte anna Aan_R012932 I 0.758
Afo_R005870 Aptenodytes forsteri Afo_R005870 I 0.758
Alligator_sinensis_CCG016283.1 Alligator sinensis Alligator_sinensis_CCG016283.1 I 0.758
Brh_R006038 Buceros rhinoceros Brh_R006038 I 0.758
Gfo_R012649 Geospiza fortis Gfo_R012649 I 0.758
Ogr04681 Ophisaurus gracilis Ogr04681 I 0.758
Pvit_15376 Pogona vitticeps Pvit_15376 I 0.758
Tal_R003673 Tyto alba Tal_R003673 I 0.758
AAB34088 Xenopus laevis AAB34088 I 0.758
AAK54135 Xenopus tropicalis AAK54135 I 0.758
AAK54137 Xenopus laevis AAK54137 I 0.758
AAK54139 Xenopus laevis AAK54139 I 0.758
snai2 Xenopus tropicalis XB-GENE-487371 I 0.758
snai2.L Xenopus laevis XB-GENE-6255814 I 0.758
snai2.S Xenopus laevis XB-GENE-865699 I 0.758
ENSAMEG00000009606 Ailuropoda melanoleuca ENSAMEG00000009606 I 0.756
SNAI2 Bos taurus ENSBTAG00000013227 I 0.756
SNAI2 Canis familiaris ENSCAFG00000006638 I 0.756
SNAI2 Choloepus hoffmanni ENSCHOG00000007046 I 0.756
SNAI2 Callithrix jacchus ENSCJAG00000013499 I 0.756
ENSCPOG00000014827 Cavia porcellus ENSCPOG00000014827 I 0.756
ENSCSAG00000014787 Chlorocebus sabaeus ENSCSAG00000014787 I 0.756
SNAI2 Dasypus novemcinctus ENSDNOG00000035997 I 0.756
SNAI2 Equus caballus ENSECAG00000010120 I 0.756
SNAI2 Felis catus ENSFCAG00000015779 I 0.756
SNAI2 Homo sapiens ENSG00000019549 D 0.756
ENSGALG00000015241 Gallus gallus ENSGALG00000015241 I 0.756
SNAI2 Gorilla gorilla ENSGGOG00000000959 I 0.756
ENSLACG00000005413 Latimeria chalumnae ENSLACG00000005413 I 0.756
SNAI2 Loxodonta africana ENSLAFG00000009299 I 0.756
SNAI2 Microcebus murinus ENSMICG00000000335 I 0.756
SNAI2 Myotis lucifugus ENSMLUG00000001086 I 0.756
SNAI2 Macaca mulatta ENSMMUG00000016195 I 0.756
ENSMPUG00000010793 Mustela putorius furo ENSMPUG00000010793 I 0.756
Snai2 Mus musculus ENSMUSG00000022676 D 0.756
ENSNLEG00000013421 Nomascus leucogenys ENSNLEG00000013421 I 0.756
ENSOARG00000013030 Ovis aries ENSOARG00000013030 I 0.756
SNAI2 Oryctolagus cuniculus ENSOCUG00000012254 I 0.756
SNAI2 Otolemur garnettii ENSOGAG00000010500 I 0.756
ENSPANG00000017540 Papio anubis ENSPANG00000017540 I 0.756
SNAI2 Procavia capensis ENSPCAG00000001788 I 0.756
ENSPPYG00000018578 Pongo abelii ENSPPYG00000018578 I 0.756
SNAI2 Pan troglodytes ENSPTRG00000020235 I 0.756
Snai2 Rattus norvegicus ENSRNOG00000047699 I 0.756
ENSSSCG00000024404 Sus scrofa ENSSSCG00000024404 I 0.756
ENSSSCG00000026570 Sus scrofa ENSSSCG00000026570 I 0.756
ENSSTOG00000028743 Ictidomys tridecemlineatus ENSSTOG00000028743 I 0.756
ENSP00000020945-D1 Bos grunniens ENSP00000020945-D1 I 0.756
ENSP00000380034 Macaca fascicularis ENSP00000380034 I 0.756
Myotis_brandtii_Snai2_10018131 Myotis brandtii Myotis_brandtii_Snai2_10018131 I 0.756