Alligator_sinensis_CCG001703.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG001703.1 T132984_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.762 0.886
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.762 0.886
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.762 0.886
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.762 0.886
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.762 0.886
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.762 0.886
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.762 0.886
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.762 0.886
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.762 0.886
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.762 0.886
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.762 0.886
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.762 0.886
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.758 0.877
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001703.1 C2H2 ZF 192 214
Alligator_sinensis_CCG001703.1 C2H2 ZF 223 245
Alligator_sinensis_CCG001703.1 C2H2 ZF 249 271
Alligator_sinensis_CCG001703.1 C2H2 ZF 277 299
Alligator_sinensis_CCG001703.1 C2H2 ZF 305 326

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPSIG00000003607 Pelodiscus sinensis ENSPSIG00000003607 I 0.817
Cmyd_10017446 Chelonia mydas Cmyd_10017446 I 0.815
ENSLACG00000017707 Latimeria chalumnae ENSLACG00000017707 I 0.812
snai1 Xenopus tropicalis XB-GENE-479970 I 0.812
snai1.S Xenopus laevis XB-GENE-865328 I 0.810
ENSAPLG00000014633 Anas platyrhynchos ENSAPLG00000014633 N 0.808
ENSFALG00000012974 Ficedula albicollis ENSFALG00000012974 N 0.808
SNAI1 Gallus gallus ENSGALG00000008018 N 0.808
SNAI1 Meleagris gallopavo ENSMGAG00000009447 N 0.808
SNAI1 Taeniopygia guttata ENSTGUG00000008724 N 0.808
Aan_R003278 Calypte anna Aan_R003278 N 0.808
Afo_R003266 Aptenodytes forsteri Afo_R003266 N 0.808
Gfo_R009598 Geospiza fortis Gfo_R009598 N 0.808
SNAI1 Anolis carolinensis ENSACAG00000015607 N 0.807
Ogr08528 Ophisaurus gracilis Ogr08528 N 0.807
SNAI1 Ornithorhynchus anatinus ENSOANG00000008681 N 0.805
Pvit_03333 Pogona vitticeps Pvit_03333 N 0.805
ENSGALG00000015241 Gallus gallus ENSGALG00000015241 I 0.764
ENSLACG00000005413 Latimeria chalumnae ENSLACG00000005413 I 0.764
SNAI2 Anolis carolinensis ENSACAG00000012332 I 0.762
ENSAMEG00000009606 Ailuropoda melanoleuca ENSAMEG00000009606 I 0.762
ENSAPLG00000003920 Anas platyrhynchos ENSAPLG00000003920 I 0.762
SNAI2 Canis familiaris ENSCAFG00000006638 I 0.762
SNAI2 Choloepus hoffmanni ENSCHOG00000007046 I 0.762
SNAI2 Callithrix jacchus ENSCJAG00000013499 I 0.762
ENSCPOG00000014827 Cavia porcellus ENSCPOG00000014827 I 0.762
ENSCSAG00000014787 Chlorocebus sabaeus ENSCSAG00000014787 I 0.762
SNAI2 Dasypus novemcinctus ENSDNOG00000035997 I 0.762
SNAI2 Equus caballus ENSECAG00000010120 I 0.762
ENSFALG00000005762 Ficedula albicollis ENSFALG00000005762 I 0.762
SNAI2 Felis catus ENSFCAG00000015779 I 0.762
SNAI2 Homo sapiens ENSG00000019549 D 0.762
SNAI2 Gorilla gorilla ENSGGOG00000000959 I 0.762
SNAI2 Loxodonta africana ENSLAFG00000009299 I 0.762
ENSMEUG00000009510 Macropus eugenii ENSMEUG00000009510 I 0.762
SNAI2 Meleagris gallopavo ENSMGAG00000010813 I 0.762
SNAI2 Microcebus murinus ENSMICG00000000335 I 0.762
SNAI2 Myotis lucifugus ENSMLUG00000001086 I 0.762
SNAI2 Macaca mulatta ENSMMUG00000016195 I 0.762
SNAI2 Monodelphis domestica ENSMODG00000010173 I 0.762
ENSMPUG00000010793 Mustela putorius furo ENSMPUG00000010793 I 0.762
Snai2 Mus musculus ENSMUSG00000022676 D 0.762
ENSNLEG00000013421 Nomascus leucogenys ENSNLEG00000013421 I 0.762
SNAI2 Ornithorhynchus anatinus ENSOANG00000007267 I 0.762
SNAI2 Oryctolagus cuniculus ENSOCUG00000012254 I 0.762
SNAI2 Otolemur garnettii ENSOGAG00000010500 I 0.762
ENSPANG00000017540 Papio anubis ENSPANG00000017540 I 0.762
SNAI2 Procavia capensis ENSPCAG00000001788 I 0.762
ENSPPYG00000018578 Pongo abelii ENSPPYG00000018578 I 0.762
ENSPSIG00000016395 Pelodiscus sinensis ENSPSIG00000016395 I 0.762
SNAI2 Pan troglodytes ENSPTRG00000020235 I 0.762
SNAI2 Pteropus vampyrus ENSPVAG00000009457 I 0.762
Snai2 Rattus norvegicus ENSRNOG00000047699 I 0.762
ENSSHAG00000004205 Sarcophilus harrisii ENSSHAG00000004205 I 0.762
ENSSTOG00000028743 Ictidomys tridecemlineatus ENSSTOG00000028743 I 0.762
SNAI2 Taeniopygia guttata ENSTGUG00000010914 I 0.762
Aan_R012932 Calypte anna Aan_R012932 I 0.762
Afo_R005870 Aptenodytes forsteri Afo_R005870 I 0.762
Alligator_sinensis_CCG016283.1 Alligator sinensis Alligator_sinensis_CCG016283.1 I 0.762
Brh_R006038 Buceros rhinoceros Brh_R006038 I 0.762
ENSP00000380034 Macaca fascicularis ENSP00000380034 I 0.762
Gfo_R012649 Geospiza fortis Gfo_R012649 I 0.762
Myotis_brandtii_Snai2_10018131 Myotis brandtii Myotis_brandtii_Snai2_10018131 I 0.762
Ogr04681 Ophisaurus gracilis Ogr04681 I 0.762
Pvit_15376 Pogona vitticeps Pvit_15376 I 0.762
Tal_R003673 Tyto alba Tal_R003673 I 0.762
AAB34088 Xenopus laevis AAB34088 I 0.762
AAK54135 Xenopus tropicalis AAK54135 I 0.762
AAK54137 Xenopus laevis AAK54137 I 0.762
AAK54139 Xenopus laevis AAK54139 I 0.762
snai2 Xenopus tropicalis XB-GENE-487371 I 0.762
snai2.L Xenopus laevis XB-GENE-6255814 I 0.762
snai2.S Xenopus laevis XB-GENE-865699 I 0.762